Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6G80_RS13885 Genome accession   NZ_CP065647
Coordinates   2590871..2591467 (-) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus licheniformis strain FDAARGOS_923     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2585871..2596467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G80_RS13865 (I6G80_13865) - 2586228..2586926 (+) 699 WP_003182905.1 DnaD domain-containing protein -
  I6G80_RS13870 (I6G80_13870) nth 2586943..2587605 (+) 663 WP_003182903.1 endonuclease III -
  I6G80_RS13875 (I6G80_13875) - 2587602..2588105 (+) 504 WP_003182901.1 YpoC family protein -
  I6G80_RS13880 (I6G80_13880) - 2588126..2590813 (-) 2688 WP_017473945.1 penicillin-binding protein 1A -
  I6G80_RS13885 (I6G80_13885) recU 2590871..2591467 (-) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  I6G80_RS13890 (I6G80_13890) - 2591521..2592480 (+) 960 WP_003182894.1 DUF2515 domain-containing protein -
  I6G80_RS13895 (I6G80_13895) sspM 2592513..2592617 (-) 105 WP_009328007.1 acid-soluble spore protein SspM -
  I6G80_RS13900 (I6G80_13900) - 2592817..2593044 (+) 228 WP_003182890.1 YppD family protein -
  I6G80_RS13905 (I6G80_13905) - 2593102..2593473 (+) 372 WP_003182887.1 YppE family protein -
  I6G80_RS13910 (I6G80_13910) - 2593575..2595005 (+) 1431 WP_016886315.1 IS1182 family transposase -
  I6G80_RS13915 (I6G80_13915) - 2595054..2595254 (-) 201 WP_011198064.1 YppF family protein -
  I6G80_RS13920 (I6G80_13920) - 2595434..2595877 (+) 444 WP_017473947.1 YppG family protein -
  I6G80_RS13925 (I6G80_13925) - 2595896..2596315 (-) 420 WP_003182880.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=512543 I6G80_RS13885 WP_003182896.1 2590871..2591467(-) (recU) [Bacillus licheniformis strain FDAARGOS_923]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=512543 I6G80_RS13885 WP_003182896.1 2590871..2591467(-) (recU) [Bacillus licheniformis strain FDAARGOS_923]
GTGATTCGTTACCCGAACGGCAAATCCTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACACCTGTACAGATTGTCCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTTATCAAAGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACAAAGAGCCGAACCTC
GTTCCCGCTTCAGAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833