Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I6G80_RS12005 Genome accession   NZ_CP065647
Coordinates   2253309..2253938 (+) Length   209 a.a.
NCBI ID   WP_003183693.1    Uniprot ID   Q8VQ77
Organism   Bacillus licheniformis strain FDAARGOS_923     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2248309..2258938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G80_RS11970 (I6G80_11970) aroE 2248951..2249787 (+) 837 WP_003183706.1 shikimate dehydrogenase -
  I6G80_RS11975 (I6G80_11975) yhbY 2249781..2250071 (+) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  I6G80_RS11980 (I6G80_11980) - 2250090..2250659 (+) 570 WP_003183702.1 nicotinate-nucleotide adenylyltransferase -
  I6G80_RS11985 (I6G80_11985) yqeK 2250649..2251212 (+) 564 WP_003183701.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  I6G80_RS11990 (I6G80_11990) rsfS 2251226..2251582 (+) 357 WP_003183699.1 ribosome silencing factor -
  I6G80_RS11995 (I6G80_11995) - 2251579..2252334 (+) 756 WP_003183697.1 class I SAM-dependent DNA methyltransferase -
  I6G80_RS12000 (I6G80_12000) comER 2252404..2253225 (-) 822 WP_003183696.1 late competence protein ComER -
  I6G80_RS12005 (I6G80_12005) comEA 2253309..2253938 (+) 630 WP_003183693.1 helix-hairpin-helix domain-containing protein Machinery gene
  I6G80_RS12010 (I6G80_12010) - 2254007..2254576 (+) 570 WP_003183690.1 ComE operon protein 2 -
  I6G80_RS12015 (I6G80_12015) - 2254580..2256967 (+) 2388 WP_009327865.1 DNA internalization-related competence protein ComEC/Rec2 -
  I6G80_RS12020 (I6G80_12020) - 2256992..2257123 (-) 132 WP_003183686.1 YqzM family protein -
  I6G80_RS12025 (I6G80_12025) holA 2257353..2258396 (+) 1044 WP_025804972.1 DNA polymerase III subunit delta -
  I6G80_RS12030 (I6G80_12030) rpsT 2258458..2258724 (-) 267 WP_003183682.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22468.42 Da        Isoelectric Point: 5.1890

>NTDB_id=512533 I6G80_RS12005 WP_003183693.1 2253309..2253938(+) (comEA) [Bacillus licheniformis strain FDAARGOS_923]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGLSIPEEASAQTYDKKEEVKREKSAGKEAVIIDLKGAVKNPGV
YQMKEGDRVHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRADGASVDIVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=512533 I6G80_RS12005 WP_003183693.1 2253309..2253938(+) (comEA) [Bacillus licheniformis strain FDAARGOS_923]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCCATTCCCGAGGAGGCTTCTGCACAGACGTATGACAAGAAGG
AGGAGGTGAAACGGGAAAAAAGCGCGGGAAAAGAGGCGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAAGAGGGAGACAGGGTCCACGATGTATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGATCAAAAGCA
AATTAACCTTGCAGCCGTTTTGCAGGACGGTATGGTGGTTTACATTCCATTTGAGGGGGAAGAGGCTGCTGATTCTTTCT
CGAAAGCGGGTTCAAGGGCAGATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGCGAGGAGAACGGACCGTTTCACACGGTAGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(147-207)

SLBB domain (SLBB)

(69-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

51.402

100

0.526