Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I6G80_RS06955 Genome accession   NZ_CP065647
Coordinates   1320813..1321097 (+) Length   94 a.a.
NCBI ID   WP_003185421.1    Uniprot ID   A0A1Y0XQV9
Organism   Bacillus licheniformis strain FDAARGOS_923     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1315813..1326097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G80_RS06920 (I6G80_06920) - 1315942..1317081 (+) 1140 WP_003185439.1 betaine/proline/choline family ABC transporter ATP-binding protein -
  I6G80_RS06925 (I6G80_06925) - 1317103..1317756 (+) 654 WP_009329612.1 ABC transporter permease -
  I6G80_RS06930 (I6G80_06930) opuCC 1317770..1318687 (+) 918 WP_009329611.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  I6G80_RS06935 (I6G80_06935) - 1318704..1319381 (+) 678 WP_003185432.1 ABC transporter permease -
  I6G80_RS06940 (I6G80_06940) - 1319429..1319827 (-) 399 WP_009329610.1 helix-turn-helix domain-containing protein -
  I6G80_RS06945 (I6G80_06945) - 1319997..1320398 (-) 402 WP_026080846.1 transcriptional regulator -
  I6G80_RS06950 (I6G80_06950) - 1320551..1320784 (+) 234 WP_085959538.1 helix-turn-helix domain-containing protein -
  I6G80_RS06955 (I6G80_06955) abrB 1320813..1321097 (+) 285 WP_003185421.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  I6G80_RS06960 (I6G80_06960) secG 1321268..1321498 (+) 231 WP_003185418.1 preprotein translocase subunit SecG -
  I6G80_RS06965 (I6G80_06965) - 1321639..1322385 (+) 747 WP_003185416.1 alpha/beta hydrolase -
  I6G80_RS06970 (I6G80_06970) rnr 1322399..1324702 (+) 2304 WP_003185414.1 ribonuclease R -
  I6G80_RS06975 (I6G80_06975) smpB 1324814..1325287 (+) 474 WP_009329604.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10486.36 Da        Isoelectric Point: 7.9620

>NTDB_id=512521 I6G80_RS06955 WP_003185421.1 1320813..1321097(+) (abrB) [Bacillus licheniformis strain FDAARGOS_923]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEKK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=512521 I6G80_RS06955 WP_003185421.1 1320813..1321097(+) (abrB) [Bacillus licheniformis strain FDAARGOS_923]
GTGAAAAATACCGGGATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATATACCGACGGCGAAAACATCATTTTGACAAAATACGCCGCAAACATGGCAT
GTTTGATGACCGGCGACATCACCACGAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCGCGCGGAGCGGAA
ATGCTCCTGGAAGATATGATGGCGGCACTGTCAGAAAAGAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(53-85)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

96.809

0.543