Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6G80_RS02640 Genome accession   NZ_CP065647
Coordinates   437769..439148 (-) Length   459 a.a.
NCBI ID   WP_197942086.1    Uniprot ID   A0AB37GLM1
Organism   Bacillus licheniformis strain FDAARGOS_923     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 432769..444148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G80_RS02620 (I6G80_02620) ispF 434288..434764 (-) 477 WP_003178280.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  I6G80_RS02625 (I6G80_02625) ispD 434757..435452 (-) 696 WP_003178279.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  I6G80_RS02630 (I6G80_02630) - 435469..436557 (-) 1089 WP_003178278.1 PIN/TRAM domain-containing protein -
  I6G80_RS02635 (I6G80_02635) disA 436689..437765 (-) 1077 WP_003178277.1 DNA integrity scanning diadenylate cyclase DisA -
  I6G80_RS02640 (I6G80_02640) radA 437769..439148 (-) 1380 WP_197942086.1 DNA repair protein RadA Machinery gene
  I6G80_RS02645 (I6G80_02645) clpC 439228..441660 (-) 2433 WP_003178275.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  I6G80_RS02650 (I6G80_02650) - 441657..442748 (-) 1092 WP_003178273.1 protein arginine kinase -
  I6G80_RS02655 (I6G80_02655) - 442748..443302 (-) 555 WP_003178271.1 UvrB/UvrC motif-containing protein -
  I6G80_RS02660 (I6G80_02660) - 443317..443781 (-) 465 WP_003178269.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49746.19 Da        Isoelectric Point: 7.7194

>NTDB_id=512504 I6G80_RS02640 WP_197942086.1 437769..439148(-) (radA) [Bacillus licheniformis strain FDAARGOS_923]
MAKTKTKFICHSCGYESAKWMGKCPGCGAWNTMVGETIKKPAANRRTAFSHSVQTVQKPSPLTSIETTEEPRIKTKLGEF
NRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADSKENVLYISGEESVKQTKLRADRLGINSPTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPHPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPSANVEGWTKPKGIEVVGVENVAEALRASLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=512504 I6G80_RS02640 WP_197942086.1 437769..439148(-) (radA) [Bacillus licheniformis strain FDAARGOS_923]
ATGGCTAAAACAAAGACTAAATTCATTTGTCACTCATGCGGCTACGAATCCGCCAAGTGGATGGGGAAATGCCCCGGATG
CGGTGCATGGAATACCATGGTGGGAGAAACGATAAAAAAACCCGCCGCCAACAGAAGAACCGCTTTTTCACATTCCGTTC
AAACAGTGCAAAAGCCTTCACCTCTCACTTCAATTGAAACAACAGAAGAGCCGCGAATTAAAACGAAACTTGGCGAATTC
AACCGCGTCTTGGGAAACGGCATCGTCAAAGGTTCACTTGTTTTAATCGGAGGCGACCCCGGCATCGGGAAATCAACCTT
GCTGCTTCAAGTATCTGCCCAGCTCGCTGATTCAAAAGAAAATGTCCTGTACATCTCAGGCGAAGAATCGGTCAAGCAGA
CAAAGCTGAGAGCAGACCGTCTAGGTATCAACAGTCCCACTCTTCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAACCCATCATTCGTAGTGGTTGATTCGATTCAAACCGTTTACCAAAGTGATATCACATCCGC
TCCGGGCAGCGTCTCCCAGGTCAGGGAATGCACCGCTGAGCTGATGAGAATTGCAAAAACGAAAGGGATTCCAATATTTA
TCGTCGGGCATGTCACAAAAGAAGGTTCGATTGCCGGACCGAGACTTCTGGAACATATGGTCGACACCGTCCTTTACTTT
GAAGGTGAGCGGCATCATACATTTCGGATTTTAAGAGCCGTCAAAAACCGGTTTGGATCAACGAATGAAATGGGAATCTT
TGAAATGAGGGAAGAGGGCCTGACAGAGGTGCTGAATCCGTCAGAAATCTTTCTCGAAGAGCGCTCGGCGGGAGCGGCCG
GATCGAGTGTCGTGGCCTCAATGGAAGGCACGAGGCCAGTCTTAGTAGAGATTCAGGCGCTGATTTCCCCCACGAGCTTT
GGGAATCCGCGCCGGATGGCAACCGGGATTGATCATAACCGCGTCTCATTGCTAATGGCAGTTTTAGAAAAAAGGGTTGG
ACTGCTGCTGCAAAATCAAGACGCCTATTTAAAAGTCGCCGGAGGCGTCAAGCTGGACGAGCCAGCGATTGACCTCGCCG
TTGCAGTGAGCATCGCCTCAAGCTTCAGAGACACCCCGCCTCATCCGACGGATTGTTTTATCGGAGAAGTCGGATTGACA
GGGGAGGTCCGCAGAGTATCAAGGATAGAACAGAGGGTGCAGGAAGCGGCGAAGCTTGGTTTTAAAAGAATGATTATTCC
TTCTGCAAATGTAGAAGGATGGACAAAGCCGAAAGGAATCGAAGTCGTCGGCGTTGAAAATGTAGCTGAGGCCCTTCGAG
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

AAA domain (AAA_25)

(66-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

91.048

99.782

0.908
  radA Streptococcus mitis NCTC 12261

61.81

98.693

0.61
  radA Streptococcus pneumoniae Rx1

61.81

98.693

0.61
  radA Streptococcus pneumoniae D39

61.81

98.693

0.61
  radA Streptococcus pneumoniae R6

61.81

98.693

0.61
  radA Streptococcus pneumoniae TIGR4

61.81

98.693

0.61
  radA Streptococcus mitis SK321

61.589

98.693

0.608