Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6G82_RS19705 Genome accession   NZ_CP065643
Coordinates   4007200..4008576 (+) Length   458 a.a.
NCBI ID   WP_053997206.1    Uniprot ID   -
Organism   Lysinibacillus macroides strain FDAARGOS_925     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4002200..4013576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G82_RS19685 (I6G82_19610) - 4002541..4003011 (+) 471 WP_053997202.1 CtsR family transcriptional regulator -
  I6G82_RS19690 (I6G82_19615) - 4003025..4003567 (+) 543 WP_053997203.1 UvrB/UvrC motif-containing protein -
  I6G82_RS19695 (I6G82_19620) - 4003564..4004676 (+) 1113 WP_053997204.1 protein arginine kinase -
  I6G82_RS19700 (I6G82_19625) - 4004666..4007110 (+) 2445 WP_053997205.1 ATP-dependent Clp protease ATP-binding subunit -
  I6G82_RS19705 (I6G82_19630) radA 4007200..4008576 (+) 1377 WP_053997206.1 DNA repair protein RadA Machinery gene
  I6G82_RS19710 (I6G82_19635) - 4008860..4009945 (+) 1086 WP_053997207.1 PIN/TRAM domain-containing protein -
  I6G82_RS19715 (I6G82_19640) ispD 4009957..4010649 (+) 693 WP_053997208.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  I6G82_RS19720 (I6G82_19645) - 4010706..4012343 (-) 1638 WP_053997209.1 SWIM zinc finger family protein -
  I6G82_RS19725 (I6G82_19650) ispF 4012523..4012999 (+) 477 WP_053997210.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50193.09 Da        Isoelectric Point: 7.6802

>NTDB_id=512497 I6G82_RS19705 WP_053997206.1 4007200..4008576(+) (radA) [Lysinibacillus macroides strain FDAARGOS_925]
MAKKKTKFICSGCGYESAKWMGRCPGCGEWNKMVEEVEVVAKGPRGAFQHSATVTQKALPIIQVQATEESRVATEMSELN
RVLGGGIVAGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVVSQELYIYSETNLEFLHQ
TIDEVQPKFVIVDSIQTIFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVQATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPASNIGGWDFPQGIEIVGVETIKDALKLCFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=512497 I6G82_RS19705 WP_053997206.1 4007200..4008576(+) (radA) [Lysinibacillus macroides strain FDAARGOS_925]
TTGGCAAAGAAAAAAACGAAATTTATCTGTTCTGGCTGTGGCTATGAATCTGCAAAATGGATGGGAAGATGTCCAGGCTG
TGGAGAATGGAATAAGATGGTGGAGGAAGTTGAGGTTGTGGCAAAAGGACCTCGTGGAGCATTCCAGCATTCCGCAACGG
TGACCCAAAAGGCACTGCCCATTATTCAGGTCCAGGCTACGGAAGAGTCCCGTGTCGCAACGGAAATGAGTGAATTGAAT
CGCGTGCTTGGGGGAGGGATTGTGGCTGGCTCGTTAGTATTAATTGGTGGTGATCCTGGGATTGGTAAATCAACGCTTTT
ATTACAAGTTTCAGCATTGCTCTCGAATAAAGGGCATCGCGTGCTTTATATTTCTGGGGAGGAATCAATTCGTCAGACAA
AATTACGAGCAGAACGTTTAGGGGTAGTTTCTCAAGAGCTATATATCTATTCTGAAACGAATCTTGAATTTTTACATCAA
ACGATTGATGAGGTGCAGCCGAAATTTGTAATCGTCGATTCTATACAGACGATCTTCCATCCAGAGGTAACGAGTGCACC
AGGCAGTGTTTCACAGGTGCGAGAATGTACAGCTGAGCTAATGCGTATAGCTAAAACAAAGGGGATTGCCATCTTTTTAG
TGGGACACGTTACAAAAGAAGGACAAATTGCTGGACCACGTATTTTAGAGCATATGGTGGATACCGTATTGTATTTTGAA
GGAGAAAGACATCATAACCATCGTATTTTACGAAGCCAAAAAAATCGCTTTGGCTCTACCAATGAAATTGCGATATTTGA
GATGCTTCAGGGAGGTTTAAAGGAAGTTCTAAATCCTTCTGAGCTATTTTTACAGGAACGCTCACAGGGAGCTGCGGGTT
CTACGATCGTGGCGTCAATGGAGGGGACAAGACCCATTCTTGTTGAAATTCAATCTTTAGTAACGCCTACAAGCTTTAAT
TATCCTAAACGTATGGCAACGGGTGTTGATCAAAATCGGGTGCAGTTGCTGATGGCAGTGCTTGAAAAGCGGATGGGGCT
TATGCTGCAAGCACAAGATGCATATATTAAAGTTGCTGGTGGTGTGAAATTGGACGAGCCTGCTATTGATTTAGCGGTGC
TGACAAGCATTGTCTCGAGCTTTAAGGATCAAGCGGTACAAGCCACAGATTGCTTTATTGGAGAGGTCGGATTGACAGGA
GAGGTACGTCGCGTATCGCGTATTGAGCAACGTGTTATTGAAGCCGCAAAGCTTGGATTTAAAAGAGCCTTTATTCCAGC
ATCTAATATCGGTGGATGGGATTTTCCGCAGGGTATTGAAATTGTAGGAGTAGAAACGATCAAGGATGCCTTAAAACTCT
GCTTTAGAGAGCTATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-221)

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.11

99.345

0.697
  radA Streptococcus pneumoniae Rx1

62.281

99.563

0.62
  radA Streptococcus pneumoniae D39

62.281

99.563

0.62
  radA Streptococcus pneumoniae R6

62.281

99.563

0.62
  radA Streptococcus pneumoniae TIGR4

62.281

99.563

0.62
  radA Streptococcus mitis NCTC 12261

62.281

99.563

0.62
  radA Streptococcus mitis SK321

62.281

99.563

0.62