Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I6G82_RS05540 Genome accession   NZ_CP065643
Coordinates   1068856..1070547 (+) Length   563 a.a.
NCBI ID   WP_053994452.1    Uniprot ID   A0A0M9DM63
Organism   Lysinibacillus macroides strain FDAARGOS_925     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1063856..1075547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G82_RS05515 (I6G82_05480) - 1064269..1064502 (+) 234 WP_053994447.1 exodeoxyribonuclease VII small subunit -
  I6G82_RS05520 (I6G82_05485) - 1064506..1065387 (+) 882 WP_053994448.1 polyprenyl synthetase family protein -
  I6G82_RS05525 (I6G82_05490) dxs 1065552..1067453 (+) 1902 WP_053994449.1 1-deoxy-D-xylulose-5-phosphate synthase -
  I6G82_RS05530 (I6G82_05495) - 1067453..1068271 (+) 819 WP_053994450.1 TlyA family RNA methyltransferase -
  I6G82_RS05535 (I6G82_05500) ahrC 1068372..1068821 (+) 450 WP_053994451.1 transcriptional regulator AhrC/ArgR -
  I6G82_RS05540 (I6G82_05505) recN 1068856..1070547 (+) 1692 WP_053994452.1 DNA repair protein RecN Machinery gene
  I6G82_RS05545 (I6G82_05510) - 1070670..1071617 (+) 948 WP_053994453.1 SpoIVB peptidase S55 domain-containing protein -
  I6G82_RS05550 (I6G82_05515) spo0A 1072037..1072828 (+) 792 WP_053994454.1 sporulation transcription factor Spo0A -
  I6G82_RS05555 (I6G82_05520) - 1073652..1074284 (+) 633 WP_053994456.1 hypothetical protein -
  I6G82_RS05560 (I6G82_05525) - 1074761..1075111 (+) 351 WP_053994457.1 hypothetical protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63275.03 Da        Isoelectric Point: 4.7836

>NTDB_id=512473 I6G82_RS05540 WP_053994452.1 1068856..1070547(+) (recN) [Lysinibacillus macroides strain FDAARGOS_925]
MLRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGARKAELGGLFQISSTDHPVLKK
LEEAGIEIEEDTIILRRDLNDSGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHIHLLDHFAEEQLVSIQ
TAYSAQYDEYRLLKKELASISIDEQLMAQRIDLYQFQIKELEEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ESKGLDWIGNAMGALEDAATVDEQFKEASEAVTTAFYALQDAAYQVKNALDELEFDPARLNDVEQRLALLQNLKRKYGST
VEEILAYYEKIKTELNKLLNRDEILQVKERRVVEMETVLNELATQLSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQIVFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLAEIDQHARIVEVSRMMSGAEITNLTLQHATELLKMAEERKK
QLR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=512473 I6G82_RS05540 WP_053994452.1 1068856..1070547(+) (recN) [Lysinibacillus macroides strain FDAARGOS_925]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATTTGACCGTTAGTTTTTCAGAAGGTTTAACTGTATT
AACAGGTGAAACAGGTGCAGGGAAATCCATTATTATTGATGCTGTCCATTTACTTGCTGGTGGACGTGGCAATTCTGAAT
TTATTCGTCATGGCGCAAGAAAAGCAGAATTAGGTGGCTTATTTCAAATTTCAAGTACAGATCATCCTGTTCTCAAAAAA
CTAGAGGAGGCTGGTATTGAAATAGAGGAGGACACCATTATTTTACGTCGTGATCTCAATGATTCAGGTAAAAGTATTTG
CCGTGTCAATGGTAAGCTTGTGCCATTATCGGTACTAAGAGATATTGGAGCTAGTTTAATTGATATTCATGGTCAGCATG
AAAATCAGGAGCTAATGGATGAGAAGCAACATATTCACTTACTCGATCACTTTGCAGAGGAGCAGCTTGTATCGATTCAA
ACAGCGTATAGTGCACAGTATGATGAATACCGTCTGCTTAAAAAGGAACTTGCTTCCATTTCAATCGATGAGCAATTAAT
GGCACAGCGTATTGATTTGTATCAATTTCAAATAAAGGAGCTAGAGGAAGCCAATTTAAAGCTTGGCGAGGAAGACGAGC
TTCTGGATGAGCGTCGCCGTCTCATGAATTTTAATAAAATTTTTGAACGCTCTAGTGCAGCCTATGAAGCCATCCAAGGG
GAGTCAAAGGGTCTTGATTGGATTGGCAATGCCATGGGTGCATTAGAAGACGCTGCCACTGTTGATGAGCAATTTAAAGA
GGCCTCTGAAGCCGTGACCACTGCCTTTTATGCATTACAGGATGCCGCTTATCAGGTTAAAAATGCTTTAGATGAATTGG
AATTTGATCCAGCTCGTTTGAATGACGTAGAGCAACGTTTAGCCTTACTGCAAAATTTAAAGCGCAAGTATGGTTCAACG
GTGGAAGAAATTTTAGCCTATTATGAAAAAATTAAAACAGAATTAAATAAGCTGCTGAACCGTGATGAAATTTTGCAGGT
AAAAGAGCGTAGGGTAGTGGAAATGGAAACTGTATTAAATGAACTAGCCACACAGCTTTCAACAGTACGGAAAGCTGCTG
CCCAACAGTTAAGTGAGGCAATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTGAATTTCGAT
GAATTGCCCTATTTCGATGCTAATGGGAAGGATCAAATTGTTTTCTATATCTCTACAAATGTGGGAGAACCACCAAAATC
CTTACCGAAAATTGCATCGGGAGGAGAATTATCACGAATGATGCTGGCACTAAAAACAATTTTTTCTTCTTCTAATGGTA
TTACCTCTATTATTTTTGATGAAGTGGATACAGGTGTTAGTGGTCGTGTGGCACAAGCAATTGCTGAAAAAATTGCTGCA
ATTTCCGTTAATTCACAAGTTTTATGTATTTCCCATTTACCACAAGTTGCTGCAATGGCAGACCATCATTATTTTATTAA
AAAAGAAGTCGAACATGATCGAACATTTACATCATTAGCGGAAATTGATCAACATGCACGAATTGTAGAAGTAAGTCGTA
TGATGTCTGGGGCAGAAATTACCAATTTAACCCTACAACATGCTACAGAGCTTTTAAAAATGGCAGAAGAACGCAAAAAG
CAATTGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M9DM63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.34

100

0.536