Detailed information NTG0512434

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KUU77_RS07250
• Genome accession: NZ_CP077985
• Coordinates: 1517489..1518493 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain ZPPH2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1512489..1523493

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KUU77_RS07220 (KUU77_07220)	fghA	1512586..1513437 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
KUU77_RS07225 (KUU77_07225)	ispF	1513508..1513981 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KUU77_RS07230 (KUU77_07230)	truD	1513978..1515045 (+)	1068	WP_029610725.1	tRNA pseudouridine(13) synthase TruD	-
KUU77_RS07235 (KUU77_07235)	surE	1515033..1515782 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
KUU77_RS07240 (KUU77_07240)	-	1515815..1516450 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KUU77_RS07245 (KUU77_07245)	-	1516496..1517389 (+)	894	WP_029610726.1	peptidoglycan DD-metalloendopeptidase family protein	-
KUU77_RS07250 (KUU77_07250)	rpoS	1517489..1518493 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
KUU77_RS07255 (KUU77_07255)	fdxA	1518920..1519243 (-)	324	WP_003092272.1	ferredoxin FdxA	-
KUU77_RS07260 (KUU77_07260)	mutS	1519310..1521877 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
KUU77_RS07265 (KUU77_07265)	-	1522003..1523010 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=512434 KUU77_RS07250 WP_003113871.1 1517489..1518493(+) (rpoS) [Pseudomonas aeruginosa strain ZPPH2]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=512434 KUU77_RS07250 WP_003113871.1 1517489..1518493(+) (rpoS) [Pseudomonas aeruginosa strain ZPPH2]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGAACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653