Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6G86_RS09470 Genome accession   NZ_CP065637
Coordinates   1840464..1842269 (-) Length   601 a.a.
NCBI ID   WP_042217234.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_929     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1835464..1847269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G86_RS09455 (I6G86_09460) - 1837146..1838405 (+) 1260 WP_042219922.1 IS110 family transposase -
  I6G86_RS09460 (I6G86_09465) - 1838775..1839683 (-) 909 WP_017370843.1 peptidyl-prolyl cis-trans isomerase -
  I6G86_RS09465 (I6G86_09470) - 1839781..1840464 (-) 684 WP_004258974.1 O-methyltransferase -
  I6G86_RS09470 (I6G86_09475) pepF 1840464..1842269 (-) 1806 WP_042217234.1 oligoendopeptidase F Regulator
  I6G86_RS10815 (I6G86_09480) - 1842253..1843259 (-) 1007 Protein_1794 competence protein CoiA -
  I6G86_RS09480 (I6G86_09485) - 1843335..1844435 (-) 1101 WP_042217237.1 YdcF family protein -
  I6G86_RS09485 (I6G86_09490) - 1844512..1845933 (-) 1422 WP_042217238.1 NCS2 family permease -
  I6G86_RS09490 (I6G86_09495) - 1846290..1847114 (+) 825 WP_004258989.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69787.38 Da        Isoelectric Point: 4.7340

>NTDB_id=512408 I6G86_RS09470 WP_042217234.1 1840464..1842269(-) (pepF) [Lactococcus garvieae strain FDAARGOS_929]
MAKKRDEIAENLTWDLSTVFENDAAWELELKRVSEKLETVNAYEGHLLDSAQSLLEITEMELEISRAVEKVYVYASMKHD
QDTQVSLYQEYEAKATNLYAKFGESFAFYEPEFLALTPERYESFRREEPKLEHYSHMFERLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKERKVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKMRGYHSARQAALSSNFIPEEVYDKLLESVNKYLPLLHRYIKLREQILGLEDDLKMYDVYTPLSDLDYKFNYPEAV
EKAQEVLQILGPEYAHHVKKAFEERWIDVAENSGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAASTDEKVRFAILNHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYAELNEKYYGLPARENPEIQYEWARIPHFYYNYYVFQYATGFAAATYLAEAIVNGGTDAREKYLTYLKAGSSDYP
LAVIAQAGVDMEETTYLESAFAVFEKRLIELEKLVEKGAHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=512408 I6G86_RS09470 WP_042217234.1 1840464..1842269(-) (pepF) [Lactococcus garvieae strain FDAARGOS_929]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACTGTATTTGAAAATGATGCCGCCTGGGA
ACTTGAACTTAAAAGAGTTTCGGAAAAATTAGAGACGGTAAACGCCTACGAAGGACATCTTCTAGATAGCGCTCAAAGCT
TATTAGAAATCACGGAAATGGAGCTAGAAATCTCGCGTGCTGTGGAAAAGGTTTATGTCTATGCCTCAATGAAGCATGAC
CAAGATACGCAAGTGAGCCTTTACCAAGAATACGAAGCCAAAGCCACAAATTTATATGCCAAGTTTGGTGAAAGCTTTGC
TTTTTACGAGCCGGAATTTTTAGCTTTAACGCCAGAACGTTATGAAAGTTTTAGAAGAGAAGAACCTAAACTGGAACACT
ATTCCCATATGTTTGAACGCCTTTTTGCTAAAAAGGAGCATATTTTAAGTCCAAAAGAGGAAAAACTTTTAGCCAGTGCG
AGTGAGATTTTTGGTGCTGCGGCCGAAACCTTTGAAATTTTTGACAATGCTGATATTGAACTTCCGATGATTAAAGATGA
AAAAGGACAGGAAGTACAGCTGACACATGGCAATTATATCTCGCTCATGGAAAGTAAGGAGCGTAAGGTACGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAACACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCAAAGATGCGGGGCTACCATTCAGCTCGTCAGGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTCTA
CGATAAGCTCTTAGAGTCTGTCAATAAATATTTGCCTCTTTTACATCGCTATATTAAATTGCGTGAACAGATTTTAGGCT
TAGAAGACGATTTAAAGATGTATGATGTTTATACACCCTTATCGGACTTGGATTATAAGTTTAACTACCCAGAGGCAGTA
GAGAAAGCCCAAGAAGTTCTTCAAATTTTGGGGCCTGAATATGCGCACCATGTAAAAAAAGCTTTTGAGGAGCGTTGGAT
TGATGTGGCAGAAAATAGCGGTAAACGTTCGGGTGCTTACTCAGGTGGATGCTATGATACAAATGCTTTTATGCTGTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTCACCTTAGTACATGAAATGGGGCACAGTATGCATTCCACATTTACACGGGAA
AATCAACCTTATGTTTATGGGGACTATCCAATCTTTCTTGCAGAAATTGCTTCAACAACCAATGAGAATATCTTGACTGA
AAGTTTACTTGCGGCCTCGACAGATGAAAAAGTGCGTTTTGCTATTTTAAACCACTGGCTTGATGGTTTCCGTGGCACTG
TTTTTCGTCAAAGTCAATTTGCTGAATTTGAACATGAAATACATAAAGCTGATCAAGAAGGAAAAGTTTTGACCAGTGAA
TTCATGAACCAGCTTTATGCAGAACTTAATGAAAAATACTATGGTTTACCCGCCCGGGAAAATCCTGAAATTCAGTATGA
GTGGGCCCGCATTCCGCACTTCTATTACAACTATTATGTCTTCCAATATGCTACTGGCTTTGCTGCAGCAACTTATCTTG
CTGAGGCTATCGTTAATGGTGGGACAGATGCGCGTGAAAAATACCTCACTTATCTCAAAGCCGGATCAAGTGATTATCCC
CTGGCTGTGATTGCTCAAGCAGGTGTGGATATGGAAGAAACAACATATTTAGAATCAGCTTTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTAGAAAAATTAGTCGAAAAAGGAGCCCATTTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-180)

Peptidase family M3 (Peptidase_M3)

(202-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.892

100

0.649