Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   I6G87_RS02885 Genome accession   NZ_CP065635
Coordinates   553189..553905 (+) Length   238 a.a.
NCBI ID   WP_014613411.1    Uniprot ID   X2JA42
Organism   Staphylococcus pseudintermedius strain FDAARGOS_930     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 548189..558905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G87_RS02860 (I6G87_02860) - 549087..550406 (+) 1320 WP_015729238.1 ISL3 family transposase -
  I6G87_RS02870 (I6G87_02870) - 551156..551722 (+) 567 WP_103263606.1 accessory gene regulator AgrB -
  I6G87_RS02875 (I6G87_02875) - 551724..551861 (+) 138 WP_020219911.1 cyclic lactone autoinducer peptide AgrD -
  I6G87_RS02880 (I6G87_02880) - 552312..553175 (+) 864 WP_233519767.1 sensor histidine kinase -
  I6G87_RS02885 (I6G87_02885) agrA 553189..553905 (+) 717 WP_014613411.1 quorum-sensing response regulator AgrA Regulator
  I6G87_RS02890 (I6G87_02890) - 553965..554909 (-) 945 WP_103263604.1 carbohydrate kinase -
  I6G87_RS02895 (I6G87_02895) - 554913..556397 (-) 1485 WP_100006620.1 sucrose-6-phosphate hydrolase -
  I6G87_RS02900 (I6G87_02900) - 556453..557400 (-) 948 WP_103263603.1 LacI family DNA-binding transcriptional regulator -
  I6G87_RS02905 (I6G87_02905) - 557737..557851 (+) 115 Protein_540 ribose transporter RbsU -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28002.15 Da        Isoelectric Point: 5.4331

>NTDB_id=512359 I6G87_RS02885 WP_014613411.1 553189..553905(+) (agrA) [Staphylococcus pseudintermedius strain FDAARGOS_930]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=512359 I6G87_RS02885 WP_014613411.1 553189..553905(+) (agrA) [Staphylococcus pseudintermedius strain FDAARGOS_930]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACCAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X2JA42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832