Detailed information NTG0051234

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: M892_RS13480
• Genome accession: NC_022269
• Coordinates: 2911815..2912801 (+)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A0AAQ3B1B6
• Organism: Vibrio campbellii ATCC BAA-1116
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2906815..2917801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M892_RS13445 (M892_13485)	ftsB	2906821..2907102 (+)	282	WP_005452106.1	cell division protein FtsB	-
M892_RS13450 (M892_13490)	ispD	2907104..2907814 (+)	711	WP_041853277.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
M892_RS13455 (M892_13495)	ispF	2907829..2908305 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
M892_RS13460 (M892_13500)	truD	2908351..2909394 (+)	1044	WP_012128911.1	tRNA pseudouridine(13) synthase TruD	-
M892_RS13465 (M892_13505)	surE	2909394..2910170 (+)	777	WP_012128910.1	5'/3'-nucleotidase SurE	-
M892_RS13470 (M892_13510)	-	2910170..2910796 (+)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
M892_RS13475 (M892_13515)	-	2910811..2911734 (+)	924	WP_012128908.1	peptidoglycan DD-metalloendopeptidase family protein	-
M892_RS13480 (M892_13520)	rpoS	2911815..2912801 (+)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
M892_RS13485 (M892_13525)	-	2912938..2914260 (+)	1323	WP_041853460.1	IS4 family transposase	-
M892_RS13490 (M892_13530)	mutS	2914326..2916887 (-)	2562	WP_012128906.1	DNA mismatch repair protein MutS	-
M892_RS13495 (M892_13535)	pncC	2916973..2917455 (+)	483	WP_012128905.1	nicotinamide-nucleotide amidase	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=51234 M892_RS13480 WP_005425361.1 2911815..2912801(+) (rpoS) [Vibrio campbellii ATCC BAA-1116]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=51234 M892_RS13480 WP_005425361.1 2911815..2912801(+) (rpoS) [Vibrio campbellii ATCC BAA-1116]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTTACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTTGAAGACGACTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A0AAQ3B1B6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857