Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   I6G91_RS04450 Genome accession   NZ_CP065631
Coordinates   1097548..1098255 (+) Length   235 a.a.
NCBI ID   WP_006302177.1    Uniprot ID   F1T5H7
Organism   Fannyhessea vaginae strain FDAARGOS_934     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092548..1103255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G91_RS04425 (I6G91_04425) - 1093001..1093855 (-) 855 WP_006302172.1 DUF5067 domain-containing protein -
  I6G91_RS04430 (I6G91_04430) - 1094038..1094985 (-) 948 WP_006302173.1 D-alanyl-D-alanine carboxypeptidase -
  I6G91_RS04435 (I6G91_04435) - 1095142..1095906 (-) 765 WP_006302174.1 ABC transporter permease -
  I6G91_RS04440 (I6G91_04440) - 1095918..1096643 (-) 726 WP_006302175.1 ABC transporter permease -
  I6G91_RS04445 (I6G91_04445) - 1096640..1097404 (-) 765 WP_010241598.1 ABC transporter ATP-binding protein -
  I6G91_RS04450 (I6G91_04450) scnR 1097548..1098255 (+) 708 WP_006302177.1 response regulator transcription factor Regulator
  I6G91_RS04455 (I6G91_04455) - 1098257..1099690 (+) 1434 WP_006302178.1 sensor histidine kinase KdpD -
  I6G91_RS04460 (I6G91_04460) - 1099687..1100142 (-) 456 WP_006302179.1 hypothetical protein -
  I6G91_RS04465 (I6G91_04465) anmK 1100132..1101334 (-) 1203 WP_232235992.1 anhydro-N-acetylmuramic acid kinase AnmK -
  I6G91_RS04470 (I6G91_04470) - 1101390..1102346 (-) 957 WP_006302181.1 N-acetylglucosamine kinase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26697.09 Da        Isoelectric Point: 5.7047

>NTDB_id=512325 I6G91_RS04450 WP_006302177.1 1097548..1098255(+) (scnR) [Fannyhessea vaginae strain FDAARGOS_934]
MNRDDYLLNKHVLLVDDEEELLHMVVSILNEYGFRHITAVQTMKDAVDVAKKFPPELAILDVMLPDGNGFDLMKCLKQYS
DCPVLFLTACGEDEDKFKGFNLGADDYVVKPFLPKELMFRIMAILRRSYKGESPVVKLKNSLLDFSAAEVIKDAKHIPLT
AKEYDLLSALYRNAGRIITIDALCEAAWGDNPFGYENSLMAHIRRIREKIERNPSQPVSLITVKGLGYKLIVEEK

Nucleotide


Download         Length: 708 bp        

>NTDB_id=512325 I6G91_RS04450 WP_006302177.1 1097548..1098255(+) (scnR) [Fannyhessea vaginae strain FDAARGOS_934]
ATGAATCGGGATGATTATTTGCTGAATAAGCACGTGTTGCTTGTTGATGATGAGGAAGAGCTGTTACATATGGTTGTATC
CATCCTCAACGAATACGGGTTTCGCCATATAACAGCGGTTCAAACCATGAAAGACGCGGTAGACGTGGCTAAAAAATTCC
CTCCAGAATTAGCAATCCTTGATGTGATGCTTCCTGATGGAAATGGATTTGATCTTATGAAGTGCCTCAAACAATATAGT
GATTGTCCTGTTTTGTTTCTCACTGCTTGCGGTGAAGACGAGGACAAATTTAAGGGATTTAACCTAGGTGCCGATGATTA
TGTGGTAAAACCGTTTCTACCAAAAGAACTCATGTTTCGTATCATGGCAATATTAAGAAGAAGTTACAAGGGCGAAAGCC
CAGTTGTAAAGCTAAAAAACAGTCTGCTTGATTTTTCGGCTGCAGAAGTAATAAAAGACGCCAAGCATATTCCGCTGACT
GCAAAAGAGTATGATTTACTTTCTGCCTTATACCGCAATGCAGGACGCATTATAACCATTGATGCGTTGTGTGAGGCGGC
GTGGGGCGACAATCCTTTTGGATACGAAAATTCTTTAATGGCACATATACGTCGTATTAGAGAAAAAATTGAGCGTAATC
CATCGCAGCCTGTTTCGCTCATAACGGTTAAGGGATTGGGCTATAAGCTGATTGTGGAAGAGAAGTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-230)

Response regulator receiver domain (Response_reg)

(12-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F1T5H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.673

94.894

0.481