Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6G97_RS06155 Genome accession   NZ_CP065626
Coordinates   1269677..1271146 (-) Length   489 a.a.
NCBI ID   WP_024524582.1    Uniprot ID   -
Organism   Edwardsiella hoshinae strain FDAARGOS_940     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1264677..1276146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G97_RS06115 (I6G97_06115) deoD 1265065..1265790 (+) 726 WP_024524588.1 purine-nucleoside phosphorylase -
  I6G97_RS06120 (I6G97_06120) cybC 1266009..1266395 (+) 387 WP_024524587.1 cytochrome b562 -
  I6G97_RS06125 (I6G97_06125) - 1266400..1266912 (+) 513 WP_035370669.1 cytochrome b/b6 domain-containing protein -
  I6G97_RS06130 (I6G97_06130) rnk 1266958..1267368 (-) 411 WP_024524585.1 nucleoside diphosphate kinase regulator -
  I6G97_RS06135 (I6G97_06135) npr 1267545..1267817 (-) 273 WP_024524584.1 PTS phosphocarrier protein NPr -
  I6G97_RS06140 (I6G97_06140) rapZ 1267825..1268676 (-) 852 WP_005281696.1 RNase adapter RapZ -
  I6G97_RS06145 (I6G97_06145) ptsN 1268784..1269230 (-) 447 WP_005297331.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6G97_RS06150 (I6G97_06150) hpf 1269368..1269655 (-) 288 WP_024524583.1 ribosome hibernation promoting factor -
  I6G97_RS06155 (I6G97_06155) rpoN/rpoN1 1269677..1271146 (-) 1470 WP_024524582.1 RNA polymerase factor sigma-54 Machinery gene
  I6G97_RS06160 (I6G97_06160) lptB 1271272..1271997 (-) 726 WP_024524581.1 LPS export ABC transporter ATP-binding protein -
  I6G97_RS06165 (I6G97_06165) lptA 1272004..1272561 (-) 558 WP_024524580.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  I6G97_RS06170 (I6G97_06170) lptC 1272536..1273108 (-) 573 WP_024524579.1 LPS export ABC transporter periplasmic protein LptC -
  I6G97_RS06175 (I6G97_06175) kdsC 1273105..1273671 (-) 567 WP_024524578.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  I6G97_RS06180 (I6G97_06180) kdsD 1273687..1274673 (-) 987 WP_024524577.1 arabinose-5-phosphate isomerase KdsD -
  I6G97_RS06185 (I6G97_06185) - 1274728..1275717 (-) 990 WP_024524576.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 55022.90 Da        Isoelectric Point: 4.4710

>NTDB_id=512267 I6G97_RS06155 WP_024524582.1 1269677..1271146(-) (rpoN/rpoN1) [Edwardsiella hoshinae strain FDAARGOS_940]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQQALESNPLLEQLEPNEEAGDDGAVLEQPQESAVTRDDADPLD
SREALEQREMPDELPLDASWDEIYTAGTPSGTGTDYHDDELPVFQGETTQTLQDYLMWQVELTPFSDTDRAIATAIVDAV
DDTGYLTASLAEILESLGDEHLLPEEIEAVLKRIQRFDPVGVAARDLRDCLLVQLSQFSDDTPYLNEARSIVDRHLELLG
NHDFRNLMRSTKLKEEVLKAAMQLIQSLDPRPGLSINTSESDYVIPDVLVHKHQQRWVVELNQDSVPRLRINQHYAALGA
QARNDNDSQFIRSNLQEAKWLIKSLESRNDTLLKVSRCIVEQQQAFFEHGPEAMKPMVLADIAQQVEMHESTISRVTTQK
FLHSPRGIFELKYFFSSHVSTDDGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTLLADQGIMVARRTVAKYRESLSIP
PSNQRKQLV

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=512267 I6G97_RS06155 WP_024524582.1 1269677..1271146(-) (rpoN/rpoN1) [Edwardsiella hoshinae strain FDAARGOS_940]
ATGAAGCAAGGCTTGCAACTCAGACTCAGCCAGCAGCTGGCCATGACGCCGCAACTGCAACAGGCTATTCGCCTGTTGCA
GCTCTCAACGCTGGAATTACAGCAAGAGATCCAACAGGCGTTAGAAAGCAATCCGCTGCTGGAGCAACTGGAGCCCAATG
AGGAAGCCGGAGACGACGGTGCCGTTCTCGAACAGCCGCAGGAGAGTGCCGTCACGCGCGATGACGCCGATCCACTGGAT
AGCCGCGAGGCATTGGAGCAACGGGAAATGCCGGACGAACTGCCACTCGATGCCAGCTGGGACGAGATCTATACCGCCGG
CACACCCTCAGGTACGGGAACCGATTATCACGATGACGAGTTGCCGGTGTTCCAAGGCGAAACGACGCAAACACTGCAAG
ACTATCTGATGTGGCAGGTTGAACTGACCCCATTCAGCGATACCGATCGGGCGATCGCCACGGCCATCGTCGACGCGGTA
GACGATACCGGCTATCTCACCGCCTCACTGGCAGAGATCTTGGAGAGTCTCGGAGACGAGCATCTCTTGCCGGAGGAAAT
CGAAGCCGTTCTCAAGCGGATTCAACGCTTCGATCCGGTGGGCGTCGCCGCGCGCGATCTGCGCGATTGCCTGTTGGTGC
AGCTCTCCCAATTTTCCGACGACACGCCCTATCTCAACGAGGCGCGCAGCATCGTCGATCGCCATCTTGAACTCCTGGGA
AATCACGATTTCCGAAATCTGATGCGTTCGACTAAGCTAAAAGAAGAAGTGCTCAAGGCGGCAATGCAACTGATTCAGAG
CCTCGACCCACGGCCGGGACTCTCCATCAATACCAGCGAGTCTGACTATGTCATCCCCGATGTGTTGGTCCATAAACATC
AGCAGCGCTGGGTAGTCGAGCTCAATCAGGATAGCGTACCGCGCCTGCGCATCAATCAGCATTACGCCGCGTTGGGTGCC
CAAGCGCGTAACGATAACGACAGCCAGTTCATCCGCAGTAATCTGCAAGAGGCGAAGTGGCTGATCAAGAGTCTGGAGAG
CCGTAACGATACCCTGCTGAAGGTATCGCGTTGTATCGTAGAGCAGCAGCAGGCATTTTTCGAACATGGACCGGAGGCGA
TGAAACCGATGGTGCTGGCCGATATTGCCCAGCAAGTCGAAATGCACGAATCAACGATCTCACGCGTGACCACTCAGAAG
TTTCTGCACAGTCCGCGTGGGATCTTTGAACTGAAATATTTCTTCTCCAGCCACGTCAGCACTGATGACGGCGGTGAGGC
CTCATCCACAGCGATCCGTGCGCTGGTGAAGAAACTGATCGCGGCGGAAAATCCGGCGAAACCACTGAGTGATAGCAAAC
TTACCACGCTATTAGCTGATCAGGGTATTATGGTCGCCCGGCGTACCGTCGCTAAATATCGAGAGTCTTTGTCCATTCCA
CCGTCCAATCAGCGCAAACAGCTGGTGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(329-487)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(128-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.367

100

0.481