Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6H00_RS09205 Genome accession   NZ_CP065615
Coordinates   1764879..1765508 (-) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   A0A377CFT3
Organism   Escherichia coli strain FDAARGOS_943     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759879..1770508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H00_RS09190 (I6H00_09190) helD 1760121..1762175 (-) 2055 WP_038340030.1 DNA helicase IV -
  I6H00_RS09195 (I6H00_09195) yccF 1762298..1762744 (+) 447 WP_001261235.1 YccF domain-containing protein -
  I6H00_RS09200 (I6H00_09200) yccS 1762754..1764916 (+) 2163 WP_191028092.1 YccS family putative transporter -
  I6H00_RS09205 (I6H00_09205) sxy/tfoX 1764879..1765508 (-) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6H00_RS09210 (I6H00_09210) sulA 1765727..1766236 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  I6H00_RS09215 (I6H00_09215) ompA 1766592..1767644 (+) 1053 WP_032223517.1 porin OmpA -
  I6H00_RS09220 (I6H00_09220) matP 1767720..1768172 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  I6H00_RS09225 (I6H00_09225) ycbZ 1768358..1770118 (+) 1761 WP_038340035.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=512241 I6H00_RS09205 WP_001612760.1 1764879..1765508(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_943]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=512241 I6H00_RS09205 WP_001612760.1 1764879..1765508(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_943]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTTTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTCGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377CFT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995