Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6H01_RS22370 Genome accession   NZ_CP065613
Coordinates   4609381..4610010 (+) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   A0A377CFT3
Organism   Escherichia coli strain FDAARGOS_944     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4604381..4615010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H01_RS22350 (I6H01_22350) ycbZ 4604770..4606530 (-) 1761 WP_038340035.1 Lon protease family protein -
  I6H01_RS22355 (I6H01_22355) matP 4606716..4607168 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  I6H01_RS22360 (I6H01_22360) ompA 4607244..4608296 (-) 1053 WP_032223517.1 porin OmpA -
  I6H01_RS22365 (I6H01_22365) sulA 4608653..4609162 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  I6H01_RS22370 (I6H01_22370) sxy/tfoX 4609381..4610010 (+) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6H01_RS22375 (I6H01_22375) yccS 4609973..4612135 (-) 2163 WP_073801707.1 YccS family putative transporter -
  I6H01_RS22380 (I6H01_22380) yccF 4612145..4612591 (-) 447 WP_001261235.1 YccF domain-containing protein -
  I6H01_RS22385 (I6H01_22385) helD 4612714..4614768 (+) 2055 WP_038340030.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=512237 I6H01_RS22370 WP_001612760.1 4609381..4610010(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_944]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=512237 I6H01_RS22370 WP_001612760.1 4609381..4610010(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_944]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTTTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTCGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377CFT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995