Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6H03_RS20675 Genome accession   NZ_CP065607
Coordinates   4251137..4251766 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FDAARGOS_946     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4246137..4256766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H03_RS20655 (I6H03_20665) ycbZ 4246538..4248298 (-) 1761 WP_000156526.1 Lon protease family protein -
  I6H03_RS20660 (I6H03_20670) matP 4248484..4248936 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  I6H03_RS20665 (I6H03_20675) ompA 4249012..4250052 (-) 1041 WP_000750416.1 porin OmpA -
  I6H03_RS20670 (I6H03_20680) sulA 4250409..4250918 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  I6H03_RS20675 (I6H03_20685) sxy/tfoX 4251137..4251766 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6H03_RS20680 (I6H03_20690) yccS 4251729..4253891 (-) 2163 WP_000875023.1 YccS family putative transporter -
  I6H03_RS20685 (I6H03_20695) yccF 4253901..4254347 (-) 447 WP_001261230.1 YccF domain-containing protein -
  I6H03_RS20690 (I6H03_20700) helD 4254470..4256524 (+) 2055 WP_001301436.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=512217 I6H03_RS20675 WP_000839153.1 4251137..4251766(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_946]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=512217 I6H03_RS20675 WP_000839153.1 4251137..4251766(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_946]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1