Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   I4W80_RS14890 Genome accession   NZ_CP065591
Coordinates   2875486..2876127 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 1817     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2870486..2881127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4W80_RS14855 (I4W80_14855) - 2871614..2872045 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  I4W80_RS14860 (I4W80_14860) - 2872045..2872386 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  I4W80_RS14865 (I4W80_14865) - 2872379..2873857 (+) 1479 WP_206115691.1 Na+/H+ antiporter subunit D -
  I4W80_RS14870 (I4W80_14870) - 2873864..2874343 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  I4W80_RS14875 (I4W80_14875) - 2874343..2874624 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  I4W80_RS14880 (I4W80_14880) mnhG 2874608..2874982 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  I4W80_RS14885 (I4W80_14885) - 2875073..2875462 (-) 390 WP_008345855.1 hotdog fold thioesterase -
  I4W80_RS14890 (I4W80_14890) comA 2875486..2876127 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  I4W80_RS14895 (I4W80_14895) comP 2876208..2878514 (-) 2307 WP_035389261.1 ATP-binding protein Regulator
  I4W80_RS14900 (I4W80_14900) comX 2878528..2878698 (-) 171 WP_017358941.1 competence pheromone ComX -
  I4W80_RS14905 (I4W80_14905) - 2878676..2879599 (-) 924 WP_206115693.1 polyprenyl synthetase family protein -
  I4W80_RS14910 (I4W80_14910) degQ 2879751..2879891 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  I4W80_RS14915 (I4W80_14915) - 2880397..2880750 (+) 354 WP_019744042.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=512135 I4W80_RS14890 WP_007500477.1 2875486..2876127(-) (comA) [Bacillus altitudinis strain 1817]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=512135 I4W80_RS14890 WP_007500477.1 2875486..2876127(-) (comA) [Bacillus altitudinis strain 1817]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCAATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718