Detailed information NTG0512133

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KUU78_RS07210
• Genome accession: NZ_CP077971
• Coordinates: 1494727..1495731 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain ZPPH33
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1489727..1500731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KUU78_RS07180 (KUU78_07180)	fghA	1489824..1490675 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
KUU78_RS07185 (KUU78_07185)	ispF	1490746..1491219 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KUU78_RS07190 (KUU78_07190)	truD	1491216..1492283 (+)	1068	WP_029610725.1	tRNA pseudouridine(13) synthase TruD	-
KUU78_RS07195 (KUU78_07195)	surE	1492271..1493020 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
KUU78_RS07200 (KUU78_07200)	-	1493053..1493688 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KUU78_RS07205 (KUU78_07205)	-	1493734..1494627 (+)	894	WP_029610726.1	peptidoglycan DD-metalloendopeptidase family protein	-
KUU78_RS07210 (KUU78_07210)	rpoS	1494727..1495731 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
KUU78_RS07215 (KUU78_07215)	fdxA	1496158..1496481 (-)	324	WP_003092272.1	ferredoxin FdxA	-
KUU78_RS07220 (KUU78_07220)	mutS	1496548..1499115 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
KUU78_RS07225 (KUU78_07225)	-	1499241..1500248 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=512133 KUU78_RS07210 WP_003113871.1 1494727..1495731(+) (rpoS) [Pseudomonas aeruginosa strain ZPPH33]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=512133 KUU78_RS07210 WP_003113871.1 1494727..1495731(+) (rpoS) [Pseudomonas aeruginosa strain ZPPH33]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGAACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653