Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   I4W80_RS05195 Genome accession   NZ_CP065591
Coordinates   1030338..1030916 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain 1817     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1025338..1035916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4W80_RS05175 (I4W80_05175) - 1025831..1027192 (-) 1362 WP_370539267.1 globin-coupled sensor protein -
  I4W80_RS05180 (I4W80_05180) - 1027218..1028750 (-) 1533 WP_046343104.1 FAD-dependent oxidoreductase -
  I4W80_RS05185 (I4W80_05185) - 1028893..1029753 (+) 861 WP_050827114.1 SDR family oxidoreductase -
  I4W80_RS05190 (I4W80_05190) - 1029812..1030048 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  I4W80_RS05195 (I4W80_05195) comK 1030338..1030916 (+) 579 WP_017366958.1 competence protein ComK Regulator
  I4W80_RS05200 (I4W80_05200) - 1031060..1032166 (+) 1107 WP_206116119.1 alanine racemase -
  I4W80_RS05205 (I4W80_05205) - 1032468..1032950 (+) 483 WP_146269903.1 hypothetical protein -
  I4W80_RS05210 (I4W80_05210) - 1032981..1034420 (-) 1440 WP_206116120.1 PLP-dependent aminotransferase family protein -
  I4W80_RS05215 (I4W80_05215) - 1034564..1035733 (+) 1170 WP_017360232.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=512099 I4W80_RS05195 WP_017366958.1 1030338..1030916(+) (comK) [Bacillus altitudinis strain 1817]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=512099 I4W80_RS05195 WP_017366958.1 1030338..1030916(+) (comK) [Bacillus altitudinis strain 1817]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGTA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCGTCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615