Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   I4W80_RS01980 Genome accession   NZ_CP065591
Coordinates   364739..365167 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain 1817     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 359739..370167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4W80_RS01950 (I4W80_01950) - 359883..360212 (+) 330 WP_007498247.1 YckD family protein -
  I4W80_RS01955 (I4W80_01955) - 360259..361023 (-) 765 WP_017358554.1 MBL fold metallo-hydrolase -
  I4W80_RS01960 (I4W80_01960) - 361139..361558 (+) 420 WP_017358553.1 Lrp/AsnC family transcriptional regulator -
  I4W80_RS01965 (I4W80_01965) - 361583..362389 (+) 807 WP_017358552.1 aminoglycoside N(3)-acetyltransferase -
  I4W80_RS01970 (I4W80_01970) comJ 362391..362777 (-) 387 WP_017358551.1 competence protein ComJ -
  I4W80_RS01975 (I4W80_01975) - 362915..364612 (-) 1698 WP_017358550.1 methyl-accepting chemotaxis protein -
  I4W80_RS01980 (I4W80_01980) nucA/comI 364739..365167 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  I4W80_RS01985 (I4W80_01985) - 365534..367603 (+) 2070 WP_017358548.1 hydantoinase/oxoprolinase family protein -
  I4W80_RS01990 (I4W80_01990) - 367593..369578 (+) 1986 WP_017358547.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=512093 I4W80_RS01980 WP_007498233.1 364739..365167(-) (nucA/comI) [Bacillus altitudinis strain 1817]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=512093 I4W80_RS01980 WP_007498233.1 364739..365167(-) (nucA/comI) [Bacillus altitudinis strain 1817]
ATGAAACTTCTTAAAACCATTCTATTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514