Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H5J24_RS01740 Genome accession   NZ_CP065589
Coordinates   370050..371399 (-) Length   449 a.a.
NCBI ID   WP_065395177.1    Uniprot ID   A0A1B8ZGM1
Organism   Chryseobacterium capnotolerans isolate DH-B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 365050..376399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5J24_RS01715 (H5J24_01650) - 366366..366884 (+) 519 WP_068944673.1 DUF6702 family protein -
  H5J24_RS01720 (H5J24_01655) - 366881..367474 (-) 594 WP_068944672.1 ACP phosphodiesterase -
  H5J24_RS01725 (H5J24_01660) - 367471..368178 (-) 708 WP_068944671.1 VanW family protein -
  H5J24_RS01730 (H5J24_01665) - 368175..368843 (-) 669 WP_228407675.1 class I SAM-dependent methyltransferase -
  H5J24_RS01735 (H5J24_01670) - 368906..370036 (-) 1131 WP_068944669.1 helix-turn-helix domain-containing protein -
  H5J24_RS01740 (H5J24_01675) radA 370050..371399 (-) 1350 WP_065395177.1 DNA repair protein RadA Machinery gene
  H5J24_RS01745 (H5J24_01680) - 371789..373399 (+) 1611 WP_068944668.1 CTP synthase -
  H5J24_RS01750 (H5J24_01685) yidC 373656..375449 (+) 1794 WP_068944667.1 membrane protein insertase YidC -
  H5J24_RS01755 (H5J24_01690) - 375535..376119 (-) 585 WP_068944666.1 ribonuclease HII -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49870.51 Da        Isoelectric Point: 6.6121

>NTDB_id=512074 H5J24_RS01740 WP_065395177.1 370050..371399(-) (radA) [Chryseobacterium capnotolerans isolate DH-B6]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGQWNTLVEEVVEKPNSKAVPFSKTKQHVINIIEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENSIPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQAEQRITEAEKLGYEKIFISNLNKLPKKKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=512074 H5J24_RS01740 WP_065395177.1 370050..371399(-) (radA) [Chryseobacterium capnotolerans isolate DH-B6]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACCCAATATTCCCAATGGATGGGACAATGTAAAAACTG
TGGACAATGGAACACCTTGGTGGAAGAAGTGGTAGAAAAACCTAATAGCAAGGCGGTCCCTTTCTCCAAAACCAAACAAC
ATGTCATCAATATCATTGAGGTAGAAACCAGTGAAGAACCGAGAATAAAGACACCTTCTGAAGAACTAAACCGTGTTCTG
GGAGGTGGAATTGTCCTAGGGTCTGTTACTCTCATCGGTGGAGAACCAGGAATTGGAAAATCTACCCTGCTGCTTCAGCT
TGCCTTAAAAATGAAGAAAAAAATCTTCTATGTTTCCGGGGAAGAAAGTGCTTCTCAGATTAAAATGAGAGCTGACAGGT
TAACGGATATTCAAAACCCGAACTGCTTCCTGTTTACAGAAACCTCCCTGGAAAAAATTCTTCATGAAGCCAAAAAACTG
GAGCCGGATTTTATGATTATCGATTCTATCCAGACACTTCAGTCCCAATTGATCGAAAGTTCTCCGGGAACTGTCTCTCA
AATCAGAGAATGTTCCAACGAGATTATTAAGTATGCTAAGGAAAACAGTATTCCTGTGTTTTTGGTAGGTCATATTACCA
AAGATGGCCAAATTGCCGGTCCAAAGGTATTGGAGCACATGGTAGATGTTGTTTTAAATTTTGATGGAGACCGAAATCAC
CTATTCAGGCTATTGAGAGCCAACAAAAACCGTTTTGGATCTACTTCTGAAATTGGGATTTATGAAATGATTTCTCAAGG
ATTGAAGGAAATTAAAAACCCTTCAGAAATCCTTATCACCAAGAAATTTGAAGAGCTATCCGGAAATTCTGTTGCAGTAA
CCTTAGAAGGAAACAGACCTATGCTTTTGGAAATCCAGGCGCTGGTAAGTACAGCGGTGTATGGTACTCCTCAAAGAAGT
TCTACAGGCTTTGATTCCAAAAGATTGAATATGCTTCTGGCAGTACTGGAGAAAAGAGCAGGTTTCCAATTGGGAGCTAA
GGACGTTTTCCTTAATATTACAGGAGGAATAAAAACAGATGATCCGGCTTTGGATCTGGCTGTCATAGCTTCTGTCCTCT
CATCCAATGAAGATATTGCTATTTCAGAACATTACTGTTTTGCTGGAGAGATCGGGCTAAGTGGAGAAATTCGTCCGGTT
GCCCAGGCAGAACAAAGAATTACCGAAGCCGAAAAGCTAGGGTACGAGAAAATTTTCATTTCCAATCTCAATAAACTTCC
GAAGAAAAAATTTGGTATTAAGATTGAAGAAGTGAGCAAAATTGAAGATTTTCATGAGAGACTTTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-422)

AAA domain (AAA_25)

(65-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8ZGM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.336

100

0.497
  radA Streptococcus mitis NCTC 12261

48.026

100

0.488
  radA Streptococcus pneumoniae D39

47.807

100

0.486
  radA Streptococcus pneumoniae TIGR4

47.807

100

0.486
  radA Streptococcus pneumoniae R6

47.807

100

0.486
  radA Streptococcus pneumoniae Rx1

47.807

100

0.486
  radA Streptococcus mitis SK321

49.882

94.209

0.47