Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ETC93_RS08000 Genome accession   NZ_CP065564
Coordinates   1720770..1721375 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Albany strain R15.2267     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1715770..1726375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETC93_RS07980 (ETC93_07980) - 1716165..1717925 (-) 1761 WP_023241544.1 AAA family ATPase -
  ETC93_RS07985 (ETC93_07985) matP 1718111..1718563 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  ETC93_RS07990 (ETC93_07990) ompA 1718635..1719687 (-) 1053 WP_001670727.1 porin OmpA -
  ETC93_RS07995 (ETC93_07995) sulA 1720044..1720553 (-) 510 WP_187557287.1 SOS-induced cell division inhibitor SulA -
  ETC93_RS08000 (ETC93_08000) sxy/tfoX 1720770..1721375 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  ETC93_RS08005 (ETC93_08005) yccS 1721362..1723515 (-) 2154 WP_023241545.1 YccS family putative transporter -
  ETC93_RS08010 (ETC93_08010) - 1723534..1723980 (-) 447 WP_001261222.1 YccF domain-containing protein -
  ETC93_RS08015 (ETC93_08015) helD 1724104..1726158 (+) 2055 WP_023241546.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=511959 ETC93_RS08000 WP_001202375.1 1720770..1721375(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Albany strain R15.2267]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=511959 ETC93_RS08000 WP_001202375.1 1720770..1721375(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Albany strain R15.2267]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTCCCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCACTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751