Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JNUCC52_RS22535 Genome accession   NZ_CP065546
Coordinates   4554004..4555695 (+) Length   563 a.a.
NCBI ID   WP_337980885.1    Uniprot ID   -
Organism   Lysinibacillus sp. JNUCC-52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4549004..4560695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC52_RS22510 (JNUCC52_22430) xseB 4549301..4549534 (+) 234 WP_173479030.1 exodeoxyribonuclease VII small subunit -
  JNUCC52_RS22515 (JNUCC52_22435) - 4549540..4550421 (+) 882 WP_337980884.1 polyprenyl synthetase family protein -
  JNUCC52_RS22520 (JNUCC52_22440) dxs 4550586..4552487 (+) 1902 WP_173479028.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JNUCC52_RS22525 (JNUCC52_22445) - 4552487..4553305 (+) 819 WP_173479027.1 TlyA family RNA methyltransferase -
  JNUCC52_RS22530 (JNUCC52_22450) argR 4553407..4553856 (+) 450 WP_173479026.1 transcriptional regulator ArgR -
  JNUCC52_RS22535 (JNUCC52_22455) recN 4554004..4555695 (+) 1692 WP_337980885.1 DNA repair protein RecN Machinery gene
  JNUCC52_RS22540 (JNUCC52_22460) - 4555823..4556770 (+) 948 WP_173479024.1 SpoIVB peptidase S55 domain-containing protein -
  JNUCC52_RS22545 (JNUCC52_22465) spo0A 4557132..4557923 (+) 792 WP_173479023.1 sporulation transcription factor Spo0A -
  JNUCC52_RS22550 (JNUCC52_22470) - 4558266..4558643 (+) 378 WP_173479022.1 PH domain-containing protein -
  JNUCC52_RS22555 (JNUCC52_22475) - 4558842..4559042 (+) 201 WP_337980886.1 hypothetical protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63367.16 Da        Isoelectric Point: 4.7384

>NTDB_id=511890 JNUCC52_RS22535 WP_337980885.1 4554004..4555695(+) (recN) [Lysinibacillus sp. JNUCC-52]
MLRELSIRNFAIIEDLTVSFSDGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGAKKAELGGLFQISSAAHPVYKK
LEEAGIEIEEDSIILRRDLNDSGKSVCRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHIYLLDHFAEEQLAPIL
EKYSKQYNEYRALKKELATISIDEQLMAQRIDLYQFQIKELEDANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALDDAATIDEQFKEASESVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEEMIAYYEKIKTELGELLNRDEILQVKERKVLEMEVILGELAEELSHVRKEAANDLSEAIMAELRELHMEKAKFIVNFD
TLPYFDVNGKDQVVFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGVTSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLAEIDTHARIEEVSRMMSGAEITELTLQHATELLKMANERKK
HMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=511890 JNUCC52_RS22535 WP_337980885.1 4554004..4555695(+) (recN) [Lysinibacillus sp. JNUCC-52]
GTGTTAAGAGAGCTTAGTATTCGAAATTTTGCCATTATTGAGGATTTAACAGTTAGTTTTTCAGATGGGCTAACTGTGTT
AACAGGAGAAACTGGTGCTGGTAAGTCAATAATTATTGATGCGGTACATTTACTTGCTGGTGGTAGAGGTAATTCGGAAT
TTATACGTCATGGTGCAAAAAAAGCCGAATTAGGTGGGCTATTTCAAATTTCAAGTGCTGCACATCCTGTATATAAAAAA
CTGGAGGAGGCAGGCATTGAAATAGAAGAGGATTCCATTATTTTGCGTCGGGACTTAAATGACTCGGGCAAAAGTGTCTG
TCGGGTTAATGGTAAATTAGTGCCATTATCGGTTTTGCGTGACATTGGTGCAAGTCTTATTGATATTCATGGTCAACATG
AAAACCAAGAACTTATGGATGAAAAGCAACATATTTATTTACTCGATCACTTCGCGGAAGAGCAACTAGCACCAATTCTT
GAAAAATACAGTAAACAATATAACGAATATCGTGCATTGAAAAAAGAATTAGCGACAATTTCTATAGATGAGCAGTTAAT
GGCTCAGCGTATTGATTTGTATCAGTTCCAAATAAAAGAACTTGAAGATGCAAATTTAAAGCTAGGTGAAGAAGATGAGC
TTCTTGATGAACGTCGACGTCTGATGAATTTTAATAAAATATTTGAGCGCTCAAGTGCTGCTTATGAAGCGATTCAAGGT
GAAACAAAAGGTCTTGACTGGATCGGCACAGCAATGGGAGCATTAGATGATGCAGCGACGATTGATGAACAGTTTAAAGA
GGCATCTGAGTCAGTAACAACTGCCTTTTACGCACTGCAAGATGCAGCATATCAAGTGAAAAACGTTTTAGATGAGCTAG
AATTTGATCCAGCGCGCTTAAATGAAGTTGAGCAACGCCTTGCGCTGTTCCAAAACTTAAAGCGTAAATATGGCTCAACA
GTCGAAGAAATGATTGCCTATTATGAAAAAATTAAAACTGAGCTAGGTGAGCTTTTAAATCGCGATGAAATTTTACAAGT
AAAAGAACGGAAAGTACTTGAAATGGAAGTCATATTAGGCGAACTTGCAGAAGAACTATCACATGTTCGAAAAGAAGCGG
CAAATGACTTAAGTGAAGCCATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTAAATTTTGAT
ACTTTACCTTATTTTGATGTAAATGGTAAAGATCAAGTTGTATTTTATATTTCAACGAATGTCGGTGAACCACCTAAATC
TTTACCGAAAATTGCTTCTGGTGGAGAACTATCACGTATGATGTTAGCCCTAAAGACAATTTTCTCATCTTCAAACGGTG
TGACGTCCATCATTTTCGATGAAGTGGATACTGGTGTAAGTGGTCGAGTGGCGCAAGCAATTGCTGAAAAAATTGCAGCC
ATTTCGGTTAATTCTCAAGTGCTGTGTATTTCACATCTTCCACAAGTGGCAGCGATGGCCGATCATCATTACTTTATTAA
AAAAGAGGTTGAACATGATCGTACATTTACATCATTAGCTGAAATTGATACCCATGCACGTATTGAGGAAGTAAGCAGAA
TGATGTCAGGTGCAGAAATTACCGAATTAACTTTACAGCATGCGACAGAATTGTTAAAGATGGCTAACGAACGAAAAAAA
CATATGCGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.431

100

0.536