Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JNUCC52_RS15605 Genome accession   NZ_CP065546
Coordinates   3149520..3150470 (+) Length   316 a.a.
NCBI ID   WP_173479378.1    Uniprot ID   -
Organism   Lysinibacillus sp. JNUCC-52     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3144520..3155470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC52_RS15585 (JNUCC52_15540) - 3145016..3146143 (+) 1128 WP_173479374.1 M20 peptidase aminoacylase family protein -
  JNUCC52_RS15590 (JNUCC52_15545) - 3146159..3146983 (+) 825 WP_337980293.1 GNAT family N-acetyltransferase -
  JNUCC52_RS15595 (JNUCC52_15550) menC 3147005..3148114 (+) 1110 WP_337980294.1 o-succinylbenzoate synthase -
  JNUCC52_RS15600 (JNUCC52_15555) - 3148181..3149236 (+) 1056 WP_337980295.1 hypothetical protein -
  JNUCC52_RS15605 (JNUCC52_15560) ceuB 3149520..3150470 (+) 951 WP_173479378.1 ABC transporter permease Machinery gene
  JNUCC52_RS15610 (JNUCC52_15565) - 3150463..3151416 (+) 954 WP_173479379.1 iron chelate uptake ABC transporter family permease subunit -
  JNUCC52_RS15615 (JNUCC52_15570) - 3151413..3152174 (+) 762 WP_173479380.1 ABC transporter ATP-binding protein -
  JNUCC52_RS15620 (JNUCC52_15575) - 3152231..3153238 (+) 1008 WP_139860004.1 siderophore ABC transporter substrate-binding protein -
  JNUCC52_RS15625 (JNUCC52_15580) - 3153240..3153554 (+) 315 WP_139860006.1 antibiotic biosynthesis monooxygenase -
  JNUCC52_RS15630 (JNUCC52_15585) - 3153843..3154481 (-) 639 WP_337980296.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34743.01 Da        Isoelectric Point: 10.1796

>NTDB_id=511880 JNUCC52_RS15605 WP_173479378.1 3149520..3150470(+) (ceuB) [Lysinibacillus sp. JNUCC-52]
MKIRYLLTATVVLSIVSLFIGVVNIKPSDLLDFGSEETRLFLISRIPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGVLISMMFFTNVTYFQKISFAFIFALAGTLMFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYKADII
QNISAWLQGDFSLIMKGRYELLYISVPVLIMAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALVTTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDIIGRVLIFPYEIPISMTVGVIGSAIFLIMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=511880 JNUCC52_RS15605 WP_173479378.1 3149520..3150470(+) (ceuB) [Lysinibacillus sp. JNUCC-52]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGTTGTCTATTGTGTCACTATTCATTGGTGTAGTAAATATTAAGCC
AAGTGACTTATTGGACTTCGGATCAGAAGAAACTAGACTATTCTTAATTAGTCGTATACCAAGACTGGTGGCAATTTTGC
TGGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTGTCACCAACGACAGCA
GGAACTTTAGATGCTACGAAATTAGGTGTACTAATTTCAATGATGTTTTTTACAAATGTCACGTACTTTCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACGTTAATGTTTATGCAAATATTAAATCGAATAAAGTTCAAAGATGCGATTT
TTATACCGCTTATAGGCTTAATGTTCGGAAATATCCTATCTTCTATTACGACGTTCTTTGCGTATAAGGCTGATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTGATAATGAAAGGTCGTTATGAGCTTTTATACATAAGTGTACC
TGTTCTAATAATGGCTTACATTTATGCAAACCGTTTCACAGTGGCTGGAATGGGTGAGGATTTTGCAAAAAACCTTGGTC
TTTCCTACAAATTCGTTGTGAATTTAGGTTTAGTGTTAGTAGCTCTAGTGACAACTACGGTGGTACTAACAGTAGGTGTG
ATTCCGTTTCTAGGTTTAATTATTCCAAATATTATATCGCTGTTCAAAGGGGATAACCTTGCAAAGACATTACCGCACAC
GGCTTTACTCGGTATGTCGTTCCTATTATTCTGTGATATTATAGGGCGCGTGTTAATTTTCCCTTATGAAATTCCGATAA
GTATGACGGTCGGCGTCATCGGAAGTGCAATCTTTCTAATTATGTTATTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.165

100

0.532