Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JNUCC51_RS21035 Genome accession   NZ_CP065545
Coordinates   4356898..4358589 (+) Length   563 a.a.
NCBI ID   WP_337989608.1    Uniprot ID   -
Organism   Lysinibacillus sp. JNUCC-51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4351898..4363589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC51_RS21010 (JNUCC51_20880) xseB 4352310..4352543 (+) 234 WP_053483717.1 exodeoxyribonuclease VII small subunit -
  JNUCC51_RS21015 (JNUCC51_20885) - 4352547..4353428 (+) 882 WP_337989604.1 polyprenyl synthetase family protein -
  JNUCC51_RS21020 (JNUCC51_20890) dxs 4353592..4355493 (+) 1902 WP_337989605.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JNUCC51_RS21025 (JNUCC51_20895) - 4355493..4356311 (+) 819 WP_337989606.1 TlyA family RNA methyltransferase -
  JNUCC51_RS21030 (JNUCC51_20900) argR 4356413..4356862 (+) 450 WP_337989607.1 transcriptional regulator ArgR -
  JNUCC51_RS21035 (JNUCC51_20905) recN 4356898..4358589 (+) 1692 WP_337989608.1 DNA repair protein RecN Machinery gene
  JNUCC51_RS21040 (JNUCC51_20910) - 4358709..4359656 (+) 948 WP_328010888.1 SpoIVB peptidase S55 domain-containing protein -
  JNUCC51_RS21045 (JNUCC51_20915) spo0A 4359997..4360788 (+) 792 WP_100544442.1 sporulation transcription factor Spo0A -
  JNUCC51_RS21050 (JNUCC51_20920) - 4362075..4362257 (+) 183 WP_337989609.1 hypothetical protein -
  JNUCC51_RS21055 (JNUCC51_20925) - 4362415..4363092 (+) 678 WP_337989610.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63315.94 Da        Isoelectric Point: 4.7230

>NTDB_id=511853 JNUCC51_RS21035 WP_337989608.1 4356898..4358589(+) (recN) [Lysinibacillus sp. JNUCC-51]
MLRELSIRNFAIIEDLTVSFSGGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGAKRAELGGLFQISSSRHPVHKK
LEEAGIEIEEDTIILRRDLNDTGKSVCRVNGKLVPLSVLRDIGSSLIDIHGQHENQELMDEKQHINLLDHFAEEQLTPIQ
DLYSSQYDEYRSLKKELASISIDEQLMAQRIDLYQFQMKELEDANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ESKGLDWIGNAMGALEDAATIDEQFKEAAESVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALIQNLKRKYGST
VEEILAYYDKIKTELNELLNRDEILQVKERKVLEMEAVLNELASELSTVRKDAAHNLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQVIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLLEIDTNARIEEISRMMSGAEITDLTLQHATELLKMANARKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=511853 JNUCC51_RS21035 WP_337989608.1 4356898..4358589(+) (recN) [Lysinibacillus sp. JNUCC-51]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATTTAACAGTTAGTTTTTCAGGTGGTTTAACAGTTTT
AACAGGTGAAACAGGTGCAGGAAAATCAATTATTATCGATGCCGTGCATTTACTTGCTGGCGGACGAGGAAATTCCGAAT
TTATTCGTCATGGAGCTAAAAGGGCTGAATTAGGTGGTTTATTTCAAATTTCAAGTTCTAGACATCCTGTTCATAAGAAA
CTTGAAGAGGCAGGCATTGAAATTGAAGAAGATACTATAATTTTGCGCCGTGATTTAAATGATACTGGAAAAAGTGTTTG
TCGAGTAAACGGAAAACTTGTGCCATTATCTGTACTACGTGATATTGGATCTAGCCTCATTGATATTCATGGACAGCATG
AAAATCAAGAACTTATGGATGAGAAACAACATATCAATTTACTTGACCATTTTGCCGAGGAACAACTTACACCTATTCAA
GATTTGTACAGTTCCCAATATGATGAATATCGTTCACTAAAAAAAGAATTAGCTTCGATTTCGATTGATGAACAGTTAAT
GGCGCAACGTATTGATTTGTACCAATTCCAAATGAAAGAGTTGGAGGATGCCAATTTAAAACTTGGCGAAGAAGATGAGC
TTCTTGATGAACGTCGCCGTCTAATGAATTTCAATAAGATTTTCGAACGCTCGAGTGCCGCATATGAAGCTATTCAAGGT
GAATCAAAAGGCCTCGACTGGATTGGCAATGCGATGGGTGCCTTAGAGGATGCTGCGACGATTGACGAGCAATTTAAAGA
GGCAGCAGAATCTGTCACAACTGCATTTTATGCGTTACAGGATGCTGCTTACCAAGTCAAAAATGTGTTGGACGAATTAG
AATTTGATCCTGCTCGTTTAAATGAAGTTGAGCAACGTTTAGCCTTAATACAAAATTTGAAACGCAAATATGGCTCAACA
GTTGAAGAGATTTTAGCGTATTACGATAAAATTAAAACAGAGCTAAATGAGCTCTTAAATCGAGACGAAATTTTGCAAGT
AAAAGAACGTAAAGTATTGGAAATGGAAGCAGTGTTAAATGAGCTTGCTTCAGAACTTTCTACAGTTCGAAAGGACGCTG
CACATAATTTAAGTGAAGCTATTATGGCCGAACTACGTGAATTACATATGGAAAAAGCAAAATTCATTGTTAATTTTGAT
GAATTGCCTTACTTTGATGCGAATGGTAAAGATCAAGTAATTTTTTATATTTCTACAAATGTAGGCGAGCCGCCAAAATC
TTTACCGAAAATTGCTTCTGGTGGAGAATTATCACGTATGATGCTTGCGTTAAAGACGATTTTCTCATCTTCTAATGGCA
TAACATCTATTATTTTTGATGAGGTAGATACAGGTGTAAGTGGTCGTGTAGCGCAAGCAATCGCAGAAAAAATTGCTGCA
ATATCCGTTAATTCTCAAGTTTTATGTATTTCGCATTTACCGCAAGTGGCTGCGATGGCAGATCATCATTATTTTATTAA
AAAAGAAGTCGAGCATGATCGAACATTTACGTCATTACTGGAAATAGATACGAATGCTCGTATTGAAGAAATCAGTCGTA
TGATGTCTGGAGCGGAAATTACGGATTTAACTTTGCAACACGCAACGGAGCTCTTAAAAATGGCTAATGCACGAAAAAAA
CAAATGAGATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.86

100

0.542