Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JNUCC51_RS12215 Genome accession   NZ_CP065545
Coordinates   2547304..2548680 (+) Length   458 a.a.
NCBI ID   WP_337992159.1    Uniprot ID   -
Organism   Lysinibacillus sp. JNUCC-51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2542304..2553680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC51_RS12195 (JNUCC51_12110) - 2542566..2543036 (+) 471 WP_337992155.1 CtsR family transcriptional regulator -
  JNUCC51_RS12200 (JNUCC51_12115) - 2543051..2543596 (+) 546 WP_337992156.1 UvrB/UvrC motif-containing protein -
  JNUCC51_RS12205 (JNUCC51_12120) - 2543593..2544702 (+) 1110 WP_337992157.1 protein arginine kinase -
  JNUCC51_RS12210 (JNUCC51_12125) - 2544692..2547136 (+) 2445 WP_337992158.1 ATP-dependent Clp protease ATP-binding subunit -
  JNUCC51_RS12215 (JNUCC51_12130) radA 2547304..2548680 (+) 1377 WP_337992159.1 DNA repair protein RadA Machinery gene
  JNUCC51_RS12220 (JNUCC51_12135) - 2549145..2550230 (+) 1086 WP_337992160.1 PIN/TRAM domain-containing protein -
  JNUCC51_RS12225 (JNUCC51_12140) ispD 2550243..2550935 (+) 693 WP_100542794.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JNUCC51_RS12230 (JNUCC51_12145) ispF 2551224..2551700 (+) 477 WP_337992161.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JNUCC51_RS12235 (JNUCC51_12150) gltX 2551792..2553252 (+) 1461 WP_337992162.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50128.97 Da        Isoelectric Point: 7.6631

>NTDB_id=511843 JNUCC51_RS12215 WP_337992159.1 2547304..2548680(+) (radA) [Lysinibacillus sp. JNUCC-51]
MAKKKTKFVCSSCGYESAKWMGRCPGCGEWNKMVEEVEVVAKGPRGAFQHSATVTQKALPIMQIEAAEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVVSQELYIYSETNLEFLNQ
TIDDVKPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPASNIGGWDFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=511843 JNUCC51_RS12215 WP_337992159.1 2547304..2548680(+) (radA) [Lysinibacillus sp. JNUCC-51]
TTGGCAAAGAAAAAAACAAAATTTGTATGCTCAAGCTGTGGCTATGAATCTGCAAAATGGATGGGAAGATGTCCAGGATG
TGGAGAATGGAATAAGATGGTTGAAGAGGTGGAAGTCGTAGCGAAAGGGCCACGTGGGGCATTCCAACACTCTGCTACAG
TTACCCAAAAGGCTCTCCCTATTATGCAGATTGAAGCTGCTGAAGAATCACGAGTTGCAACAGAAATGGGTGAGCTTAAC
CGAGTGTTAGGTGGGGGCATCGTGCCAGGTTCTCTCGTGTTGATTGGGGGAGATCCTGGGATTGGGAAGTCGACGTTGTT
ATTACAAGTATCTGCGTTACTTTCAAATAAAGGGCATCGTGTGCTCTATATTTCTGGTGAGGAATCCATCCGTCAAACAA
AGCTACGTGCAGAACGTTTAGGGGTGGTATCGCAAGAGCTTTATATATATTCTGAGACGAATTTAGAGTTTTTAAATCAG
ACCATTGACGATGTAAAGCCAAAGTTTGTTATTGTCGATTCTATTCAAACTGTTTTTCATCCGGAGGTAACGAGTGCACC
TGGTAGTGTATCACAAGTGCGTGAATGTACAGCAGAACTTATGCGAATTGCAAAAACAAAGGGAATTGCAATTTTTTTAG
TCGGACATGTAACAAAAGAAGGACAAATTGCAGGGCCACGTATTTTGGAGCATATGGTTGATACGGTATTGTATTTTGAA
GGAGAACGACATCATAATCACCGTATTTTACGCAGCCAAAAAAACCGTTTTGGCTCTACGAATGAAATTGCTATCTTTGA
AATGCTCCAGGGGGGCTTAAAGGAAGTGTTAAACCCGTCTGAGTTGTTCTTACAGGAACGTTCACAGGGGGCGGCAGGGT
CAACAATCGTAGCCTCAATGGAAGGTACACGGCCAATTCTAGTTGAAATTCAGTCACTTGTAACACCAACAAGCTTTAAT
TACCCGAAACGAATGGCAACAGGTGTTGATCAAAACCGTGTGCAACTACTTATGGCAGTCCTTGAAAAGAGAATGGGCCT
CATGCTACAGGCTCAGGATGCATATATTAAAGTTGCTGGCGGTGTAAAGCTTGATGAGCCTGCAATTGATTTAGCCGTGT
TGACAAGTATCGTTTCGAGTTTTAAGGATCAAGCTGTCAGAGCAACTGATTGCTTTATTGGGGAAGTAGGTTTGACAGGC
GAAGTGCGTCGTGTATCTCGTATTGAACAACGTGTGATTGAGGCAGCAAAGCTCGGATTTAAACGAGCCTTCATACCGGC
TTCGAATATCGGTGGATGGGATTTTCCACAAGGTATTGAGATAGTTGGTGTGGAAACAATAAAGGATGCATTGAATGCTT
GCTTTAGAGAGCTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.925

99.127

0.703
  radA Streptococcus pneumoniae Rx1

61.842

99.563

0.616
  radA Streptococcus pneumoniae D39

61.842

99.563

0.616
  radA Streptococcus pneumoniae R6

61.842

99.563

0.616
  radA Streptococcus pneumoniae TIGR4

61.842

99.563

0.616
  radA Streptococcus mitis NCTC 12261

61.842

99.563

0.616
  radA Streptococcus mitis SK321

61.842

99.563

0.616