Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   JNUCC51_RS01935 Genome accession   NZ_CP065545
Coordinates   326807..328570 (-) Length   587 a.a.
NCBI ID   WP_337990584.1    Uniprot ID   -
Organism   Lysinibacillus sp. JNUCC-51     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 321807..333570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC51_RS01910 (JNUCC51_01910) - 322428..323114 (-) 687 WP_337990579.1 ABC transporter ATP-binding protein -
  JNUCC51_RS01915 (JNUCC51_01915) - 323111..323500 (-) 390 WP_337990580.1 GntR family transcriptional regulator -
  JNUCC51_RS01920 (JNUCC51_01920) - 323875..324456 (-) 582 WP_337990581.1 aminoglycoside phosphotransferase family protein -
  JNUCC51_RS01925 - 324471..324749 (-) 279 WP_337990582.1 hypothetical protein -
  JNUCC51_RS01930 (JNUCC51_01925) rcrQ 324979..326814 (-) 1836 WP_337990583.1 ABC transporter ATP-binding protein Regulator
  JNUCC51_RS01935 (JNUCC51_01930) rcrP 326807..328570 (-) 1764 WP_337990584.1 ABC transporter ATP-binding protein Regulator
  JNUCC51_RS01940 (JNUCC51_01935) - 328641..329084 (-) 444 WP_337990585.1 MarR family winged helix-turn-helix transcriptional regulator -
  JNUCC51_RS01945 (JNUCC51_01940) - 329692..331047 (-) 1356 WP_337990586.1 transposase -
  JNUCC51_RS01950 (JNUCC51_01945) - 331253..331765 (+) 513 WP_337990587.1 peroxiredoxin family protein -
  JNUCC51_RS01955 (JNUCC51_01950) - 332362..333426 (-) 1065 WP_337990588.1 low specificity L-threonine aldolase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64638.09 Da        Isoelectric Point: 7.3156

>NTDB_id=511819 JNUCC51_RS01935 WP_337990584.1 326807..328570(-) (rcrP) [Lysinibacillus sp. JNUCC-51]
MLKIFKYLKPKEWTLIVVSIVFIVGQVWLDLKLPDYMAKITTLVQTEGSKTSEIWSAGGKMLLCALGSMILAIIVGYFAA
KVATSLSKELRKGVFNKTLSFSMEEINGFSIASLITRSTNDITQIQQTVAMGLQVMIKAPILATWAILKIMGKSWEWSAA
TGVAVIVLLILIGNLIIFVLPKFKVVQKLTDNLNRVTREGLTGIRVVHAYNAQGYQEEKFEKVNNDLTDTNLFVNRLMAL
MQPGMGLIMSGLTLAIYWIGAHVINNAAGMDRIGKFSDMVVFSSYAMLVVMAFMLLSMTFILLPRAAVSAARINEVLNTP
QTIIDGEIKSSPKGIEGEIELRNVSFKYPDAEDYVLKDISFTAHKGETVAFIGSTGSGKSTLINLIPRFYDATEGEVLVD
GINVKEYAQEALYNKLGYVSQKAVLFSGTVKSNVAYGDNGQTSSTDEEIKKAVEIAQGQEFVEKMEGEYDATIAQGGTNL
SGGQKQRLSIARAVNRNPEIFIFDDSFSALDYKTDRQLRSTLKKETKGATSLIVAQRIGTIKDADKIIVLDEGKIVGMGK
HSELLKTCNTYQEIAYSQLSKEELEND

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=511819 JNUCC51_RS01935 WP_337990584.1 326807..328570(-) (rcrP) [Lysinibacillus sp. JNUCC-51]
ATGTTGAAAATATTTAAATACTTAAAACCAAAAGAATGGACGCTTATCGTAGTCAGTATTGTGTTCATTGTAGGGCAAGT
TTGGCTGGATTTGAAGTTGCCGGATTATATGGCTAAAATTACGACCCTTGTACAAACGGAGGGCAGTAAAACGAGCGAAA
TATGGTCAGCTGGAGGGAAGATGCTCTTATGTGCGCTTGGCAGTATGATATTGGCAATCATTGTGGGCTATTTTGCAGCA
AAGGTAGCAACGTCTCTTTCAAAGGAATTGCGAAAAGGAGTATTTAACAAAACTCTATCTTTCTCTATGGAGGAGATTAA
TGGTTTTTCAATCGCAAGCTTAATTACTCGTTCTACTAATGATATAACGCAAATACAGCAAACTGTTGCAATGGGTCTTC
AAGTTATGATCAAGGCTCCTATCCTTGCAACATGGGCTATTTTGAAAATCATGGGTAAAAGTTGGGAGTGGTCAGCGGCA
ACAGGAGTAGCTGTCATTGTTTTACTTATATTGATAGGTAACCTGATCATCTTTGTGCTACCGAAATTTAAAGTTGTTCA
AAAACTGACAGATAATCTTAACCGAGTAACAAGAGAAGGTTTAACTGGTATTCGTGTTGTTCATGCTTATAATGCACAAG
GGTATCAGGAAGAAAAATTTGAAAAAGTAAATAACGATTTAACTGATACAAATCTATTTGTGAACCGCCTTATGGCCCTT
ATGCAACCAGGGATGGGACTGATTATGTCAGGTTTAACTCTTGCAATCTATTGGATAGGAGCGCATGTAATTAATAATGC
TGCCGGTATGGATAGAATTGGTAAGTTTAGTGATATGGTCGTATTTTCATCTTATGCAATGCTGGTAGTTATGGCATTTA
TGCTATTATCAATGACATTCATTTTGCTACCAAGAGCAGCAGTATCTGCAGCGCGTATTAATGAAGTACTAAATACACCT
CAGACAATTATTGATGGAGAAATAAAATCGTCGCCTAAAGGAATCGAAGGTGAAATCGAACTGCGTAATGTTAGTTTTAA
ATATCCTGATGCAGAAGACTATGTTTTAAAGGATATTAGCTTTACAGCACATAAAGGTGAAACTGTTGCTTTTATCGGTT
CTACGGGTAGTGGTAAGAGTACGCTAATTAATTTAATTCCAAGATTTTACGATGCTACTGAGGGAGAGGTATTAGTCGAC
GGCATTAATGTAAAAGAATATGCACAAGAAGCTCTTTATAATAAGCTTGGCTACGTTTCTCAAAAAGCCGTATTATTTTC
AGGTACCGTAAAATCTAATGTTGCCTACGGTGATAACGGCCAGACTTCATCCACAGATGAGGAGATCAAAAAAGCGGTAG
AAATTGCCCAAGGGCAAGAGTTTGTGGAGAAAATGGAAGGCGAATATGATGCAACTATTGCACAAGGTGGTACAAATCTT
TCAGGGGGACAAAAACAACGTCTTTCTATTGCAAGAGCTGTGAATAGAAATCCAGAAATCTTTATTTTTGATGACTCTTT
CTCTGCTCTAGATTATAAAACAGACCGTCAACTTCGTTCTACTTTGAAAAAAGAAACGAAAGGTGCAACTTCTTTGATTG
TGGCGCAGCGAATTGGAACGATTAAAGATGCTGATAAAATCATTGTTCTTGATGAAGGTAAAATTGTTGGTATGGGGAAA
CATAGTGAACTATTAAAAACTTGTAATACTTATCAAGAAATTGCTTATTCTCAGCTATCGAAGGAGGAGTTGGAAAATGA
CTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.184

100

0.562