Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JNUCC51_RS01930 Genome accession   NZ_CP065545
Coordinates   324979..326814 (-) Length   611 a.a.
NCBI ID   WP_337990583.1    Uniprot ID   -
Organism   Lysinibacillus sp. JNUCC-51     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 319979..331814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC51_RS01900 (JNUCC51_01900) - 320414..321589 (-) 1176 WP_337990577.1 hypothetical protein -
  JNUCC51_RS01905 (JNUCC51_01905) - 321601..322428 (-) 828 WP_337990578.1 hypothetical protein -
  JNUCC51_RS01910 (JNUCC51_01910) - 322428..323114 (-) 687 WP_337990579.1 ABC transporter ATP-binding protein -
  JNUCC51_RS01915 (JNUCC51_01915) - 323111..323500 (-) 390 WP_337990580.1 GntR family transcriptional regulator -
  JNUCC51_RS01920 (JNUCC51_01920) - 323875..324456 (-) 582 WP_337990581.1 aminoglycoside phosphotransferase family protein -
  JNUCC51_RS01925 - 324471..324749 (-) 279 WP_337990582.1 hypothetical protein -
  JNUCC51_RS01930 (JNUCC51_01925) rcrQ 324979..326814 (-) 1836 WP_337990583.1 ABC transporter ATP-binding protein Regulator
  JNUCC51_RS01935 (JNUCC51_01930) rcrP 326807..328570 (-) 1764 WP_337990584.1 ABC transporter ATP-binding protein Regulator
  JNUCC51_RS01940 (JNUCC51_01935) - 328641..329084 (-) 444 WP_337990585.1 MarR family winged helix-turn-helix transcriptional regulator -
  JNUCC51_RS01945 (JNUCC51_01940) - 329692..331047 (-) 1356 WP_337990586.1 transposase -
  JNUCC51_RS01950 (JNUCC51_01945) - 331253..331765 (+) 513 WP_337990587.1 peroxiredoxin family protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67565.58 Da        Isoelectric Point: 7.8072

>NTDB_id=511818 JNUCC51_RS01930 WP_337990583.1 324979..326814(-) (rcrQ) [Lysinibacillus sp. JNUCC-51]
MTNTQNKPRKGPGGPGGPGHMMAPGEKPKNFKKPMGKLIAYCKPYLPAIIFAIVLAVTGTIFTIIGPNKLSEITDLIMDG
MSGEIDITAIGKIGLFLAILYGLSFIFNYIQAFIMATITQRVSKRLRSDISNKIDRLPLKYFDSTTYGDVLSRVTNDVDM
IGQSLNQSIGSLVSAGVMFFGSLIMMFYINVTMALSAIAATFVGFVFMSFIISKSRKYFVRQQQDLGRINGHIEEIYSGH
NVMKVYNGEKVAKQEFNEINESLFNSAWRAQFMSGMMMPLMIFIGNLGYVVVCVVGAALTVKGSITFGVIVSFMVYIRLF
TQPLSQLAQAATSLQSTAAASERVFEFLQEEELKDESDKKVTLDAKDVNGNVEFKNVKFGYTKEKLIIKDFSAHIKAGQK
VAIVGPTGAGKTTLVNLLMRFYEVDSGEIMIEDVSTNSITRKNVHDLFCMVLQDTWLFEGTIKENIIYNKNHVTDEEVVA
ACKAVGLHHFIRTLPNGYDTVLNDNTSLSVGQKQLITIARAMVKKAPLLILDEATSSVDTRTEALIQKAMDKLMVGRTSF
VIAHRLSTIKNADLILVMKDGDIIESGNHEELIAEKGFYADLYNSQFEDAS

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=511818 JNUCC51_RS01930 WP_337990583.1 324979..326814(-) (rcrQ) [Lysinibacillus sp. JNUCC-51]
ATGACTAATACACAAAATAAGCCTCGAAAAGGTCCCGGTGGTCCCGGCGGTCCAGGTCATATGATGGCTCCTGGAGAAAA
GCCAAAAAATTTTAAAAAGCCCATGGGAAAGCTGATTGCCTATTGTAAACCTTATTTACCAGCGATCATCTTTGCAATTG
TTTTGGCAGTTACAGGAACAATTTTCACAATCATTGGACCTAATAAGCTGAGTGAGATTACCGATTTGATAATGGATGGC
ATGTCTGGTGAGATTGATATTACGGCAATTGGAAAAATCGGTCTGTTCCTTGCTATTTTGTATGGGTTGAGCTTTATCTT
CAATTATATTCAGGCGTTTATTATGGCTACAATTACGCAGCGAGTTTCCAAAAGGTTACGTTCAGATATTTCGAACAAAA
TCGATAGATTACCATTGAAATACTTCGACTCGACAACCTACGGCGATGTGTTAAGCCGTGTGACGAATGATGTGGATATG
ATTGGACAGTCTCTAAACCAAAGTATTGGTTCGTTAGTGTCAGCGGGAGTTATGTTCTTTGGATCTTTGATTATGATGTT
CTATATTAATGTTACGATGGCTCTTTCTGCTATTGCAGCAACTTTCGTTGGATTTGTATTCATGTCATTTATTATATCCA
AATCCCGCAAGTACTTCGTACGCCAGCAGCAAGACCTTGGTAGAATAAATGGCCATATTGAAGAAATCTATTCAGGGCAT
AATGTCATGAAGGTTTATAACGGTGAAAAAGTAGCGAAGCAAGAATTTAATGAAATCAATGAAAGTCTATTTAATAGCGC
TTGGCGAGCACAGTTTATGTCGGGTATGATGATGCCTCTCATGATCTTTATTGGAAATTTAGGTTATGTTGTTGTTTGTG
TAGTAGGTGCTGCACTGACTGTGAAAGGTTCTATTACATTTGGTGTTATTGTTTCATTTATGGTGTATATCCGCTTATTT
ACGCAGCCGTTGTCTCAGTTAGCGCAGGCAGCTACAAGCTTGCAGTCAACTGCCGCAGCAAGTGAACGTGTATTTGAGTT
CTTACAAGAAGAGGAGCTTAAAGATGAGAGTGATAAGAAAGTCACTTTAGATGCAAAAGATGTAAACGGTAATGTAGAAT
TTAAAAACGTTAAGTTCGGATATACGAAAGAGAAACTTATTATAAAAGATTTTTCTGCTCATATTAAAGCCGGCCAAAAA
GTGGCAATTGTTGGGCCTACTGGGGCTGGGAAAACAACGCTTGTTAATCTTCTAATGCGTTTCTATGAAGTAGATAGCGG
GGAAATCATGATTGAGGACGTATCAACTAATTCAATTACTCGTAAAAATGTTCACGATTTATTTTGCATGGTGCTACAAG
ATACTTGGCTATTCGAAGGTACCATTAAGGAAAACATCATTTATAACAAGAATCATGTAACCGATGAAGAAGTAGTAGCA
GCTTGTAAAGCGGTAGGTTTGCATCACTTTATTAGAACATTACCAAACGGTTATGATACAGTTTTAAATGATAATACAAG
TTTATCTGTAGGACAAAAACAGCTTATTACGATTGCAAGGGCAATGGTTAAAAAAGCACCATTGCTTATCTTAGATGAAG
CTACTAGTTCCGTTGATACGCGTACTGAAGCGCTAATTCAAAAAGCAATGGATAAATTGATGGTGGGTAGAACATCATTT
GTTATTGCGCATAGACTTTCAACAATTAAAAACGCCGATTTGATTTTAGTTATGAAAGACGGAGACATCATTGAAAGTGG
TAATCATGAAGAACTGATTGCAGAAAAAGGATTCTATGCGGATCTATATAATAGTCAATTTGAAGATGCTTCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(49-324)

ABC transporter (ABC_tran)

(389-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.824

94.599

0.556