Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   M892_RS02785 Genome accession   NC_022269
Coordinates   617443..618387 (+) Length   314 a.a.
NCBI ID   WP_005533415.1    Uniprot ID   -
Organism   Vibrio campbellii ATCC BAA-1116     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 612443..623387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M892_RS02770 (M892_02745) - 613026..613885 (+) 860 Protein_549 AEC family transporter -
  M892_RS02775 (M892_02750) - 613977..614720 (+) 744 WP_041853358.1 metallophosphoesterase -
  M892_RS31230 - 614899..615543 (-) 645 WP_269429263.1 condensation domain-containing protein -
  M892_RS31235 (M892_17350) - 615599..617032 (-) 1434 WP_269429264.1 condensation domain-containing protein -
  M892_RS02785 (M892_02755) ceuB 617443..618387 (+) 945 WP_005533415.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  M892_RS02790 (M892_02760) - 618384..619337 (+) 954 WP_012127838.1 iron chelate uptake ABC transporter family permease subunit -
  M892_RS02795 (M892_02765) - 619394..620377 (+) 984 WP_012127837.1 siderophore ABC transporter substrate-binding protein -
  M892_RS02800 (M892_02770) - 620516..622708 (+) 2193 WP_012127836.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 33719.51 Da        Isoelectric Point: 8.4615

>NTDB_id=51181 M892_RS02785 WP_005533415.1 617443..618387(+) (ceuB) [Vibrio campbellii ATCC BAA-1116]
MNAKIIFVFFLLCIVSIFIGANPIDWSLLLKMDENAWLPITASRLPRLVALILTGAGLAMCGVILQHIVRNRFVEPGTTG
GLDAAKLGILVSIVMLPNSDKLERMIFAVVFCFAAGLIYIAIVRKIKFSNSALVPVIGLMFGSVLSAVAEFYAYQNNVLQ
SMSGWLMGDFSKVVQEHYEIIYLILPTTLLTYFYANKFTVMGMGEDAASNLGINFATTAALGLMLVSVTVAVTVVTVGAI
HFVGLVIPNLVALKYGDHLKNTLPIVALGGASLLIFCDVISRLVVFPFEVPIGLTASAIGGTLFLVLLLKGARA

Nucleotide


Download         Length: 945 bp        

>NTDB_id=51181 M892_RS02785 WP_005533415.1 617443..618387(+) (ceuB) [Vibrio campbellii ATCC BAA-1116]
ATGAACGCTAAAATTATCTTTGTTTTCTTTTTATTGTGTATCGTTTCCATTTTTATTGGCGCCAATCCAATCGATTGGTC
ACTACTGCTGAAGATGGACGAAAATGCTTGGTTGCCGATTACTGCTAGCAGACTTCCGAGGTTGGTTGCGTTGATTCTAA
CAGGGGCCGGCTTGGCGATGTGCGGCGTCATCTTGCAACATATCGTCAGAAATCGTTTTGTAGAGCCTGGGACTACCGGC
GGCCTAGATGCTGCCAAGCTTGGTATTTTGGTATCGATCGTCATGTTGCCAAATTCAGATAAGCTTGAACGCATGATTTT
TGCTGTCGTCTTTTGCTTTGCAGCAGGGCTCATTTACATCGCGATCGTACGAAAAATTAAATTCAGTAATTCAGCATTGG
TCCCAGTCATTGGACTGATGTTTGGCAGCGTATTGAGCGCAGTCGCTGAATTTTACGCTTATCAAAATAACGTTCTTCAA
AGCATGTCTGGCTGGTTAATGGGAGACTTTTCTAAGGTCGTACAGGAACACTACGAGATCATTTACCTGATTTTACCCAC
CACTCTGTTGACCTACTTCTACGCAAATAAATTTACCGTCATGGGCATGGGAGAAGATGCAGCATCAAACTTGGGCATTA
ACTTCGCAACAACGGCAGCGTTAGGTCTGATGCTGGTTTCCGTGACCGTTGCTGTGACCGTCGTGACCGTCGGAGCAATT
CATTTTGTCGGTTTAGTGATCCCAAACCTTGTCGCACTAAAATATGGCGACCACCTGAAAAACACACTGCCAATCGTGGC
ATTGGGTGGCGCATCACTGCTTATTTTTTGTGATGTGATAAGCAGACTTGTGGTCTTTCCTTTTGAGGTTCCGATCGGCC
TTACCGCGAGTGCGATTGGTGGCACCCTATTTCTTGTATTGCTCCTTAAAGGAGCACGTGCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

45.455

94.586

0.43