Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   I5367_RS16535 Genome accession   NZ_CP065539
Coordinates   3377228..3378391 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3372228..3383391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS16505 (I5367_16505) - 3372493..3372912 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  I5367_RS16510 (I5367_16510) comFC 3372986..3373675 (-) 690 WP_197197403.1 phosphoribosyltransferase family protein Machinery gene
  I5367_RS16515 (I5367_16515) - 3373681..3373965 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  I5367_RS16520 (I5367_16520) comFA 3374023..3375408 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  I5367_RS16525 (I5367_16525) - 3375516..3376364 (-) 849 WP_003151387.1 DegV family protein -
  I5367_RS16530 (I5367_16530) degU 3376462..3377151 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  I5367_RS16535 (I5367_16535) degS 3377228..3378391 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  I5367_RS16540 (I5367_16540) - 3378614..3379261 (+) 648 WP_007614107.1 YigZ family protein -
  I5367_RS16545 (I5367_16545) - 3379266..3380486 (+) 1221 WP_012118574.1 LCP family protein -
  I5367_RS16550 (I5367_16550) - 3380585..3381661 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  I5367_RS16555 (I5367_16555) tuaH 3381794..3382990 (-) 1197 WP_012118575.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=511792 I5367_RS16535 WP_007407484.1 3377228..3378391(-) (degS) [Bacillus amyloliquefaciens strain DGL1]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=511792 I5367_RS16535 WP_007407484.1 3377228..3378391(-) (degS) [Bacillus amyloliquefaciens strain DGL1]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTTAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGGGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951