Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I5367_RS11935 Genome accession   NZ_CP065539
Coordinates   2475211..2475978 (-) Length   255 a.a.
NCBI ID   WP_012118014.1    Uniprot ID   A7Z6U2
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2470211..2480978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS11915 (I5367_11915) - 2470413..2471225 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  I5367_RS11920 (I5367_11920) ccpN 2471251..2471889 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  I5367_RS11925 (I5367_11925) glyS 2471990..2474029 (-) 2040 WP_012118013.1 glycine--tRNA ligase subunit beta -
  I5367_RS11930 (I5367_11930) glyQ 2474022..2474909 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  I5367_RS11935 (I5367_11935) recO 2475211..2475978 (-) 768 WP_012118014.1 DNA repair protein RecO Machinery gene
  I5367_RS11940 (I5367_11940) - 2476015..2476158 (-) 144 WP_007408286.1 YqzL family protein -
  I5367_RS11945 (I5367_11945) era 2476313..2477218 (-) 906 WP_007408285.1 GTPase Era -
  I5367_RS11950 (I5367_11950) - 2477199..2477609 (-) 411 WP_003152976.1 cytidine deaminase -
  I5367_RS11955 (I5367_11955) - 2477733..2478107 (-) 375 WP_015240233.1 diacylglycerol kinase family protein -
  I5367_RS11960 (I5367_11960) ybeY 2478088..2478561 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  I5367_RS11965 (I5367_11965) - 2478562..2480694 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29310.95 Da        Isoelectric Point: 8.5625

>NTDB_id=511772 I5367_RS11935 WP_012118014.1 2475211..2475978(-) (recO) [Bacillus amyloliquefaciens strain DGL1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=511772 I5367_RS11935 WP_012118014.1 2475211..2475978(-) (recO) [Bacillus amyloliquefaciens strain DGL1]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATGTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z6U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.627

100

0.886