Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I5367_RS10360 Genome accession   NZ_CP065539
Coordinates   2142880..2143488 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2137880..2148488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS10320 (I5367_10320) - 2138933..2139439 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  I5367_RS10325 (I5367_10325) - 2139578..2139991 (+) 414 WP_012117834.1 Hsp20/alpha crystallin family protein -
  I5367_RS10330 (I5367_10330) - 2140021..2140455 (-) 435 WP_012117835.1 YppG family protein -
  I5367_RS10335 (I5367_10335) - 2140642..2140824 (+) 183 WP_003153532.1 YppF family protein -
  I5367_RS10340 (I5367_10340) - 2140863..2141231 (-) 369 WP_007409492.1 YppE family protein -
  I5367_RS10345 (I5367_10345) - 2141277..2141522 (-) 246 WP_012117836.1 DUF5446 family protein -
  I5367_RS10350 (I5367_10350) sspM 2141728..2141832 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  I5367_RS10355 (I5367_10355) - 2141876..2142838 (-) 963 WP_014305287.1 DUF2515 domain-containing protein -
  I5367_RS10360 (I5367_10360) recU 2142880..2143488 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  I5367_RS10365 (I5367_10365) - 2143527..2146310 (+) 2784 WP_023356988.1 PBP1A family penicillin-binding protein -
  I5367_RS10370 (I5367_10370) - 2146388..2146879 (-) 492 WP_012117839.1 YpoC family protein -
  I5367_RS10375 (I5367_10375) nth 2146876..2147535 (-) 660 WP_007612187.1 endonuclease III -
  I5367_RS10380 (I5367_10380) dnaD 2147554..2148252 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=511762 I5367_RS10360 WP_012117837.1 2142880..2143488(+) (recU) [Bacillus amyloliquefaciens strain DGL1]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=511762 I5367_RS10360 WP_012117837.1 2142880..2143488(+) (recU) [Bacillus amyloliquefaciens strain DGL1]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAAATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891