Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I5367_RS07200 Genome accession   NZ_CP065539
Coordinates   1376435..1376719 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1371435..1381719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS07180 (I5367_07180) - 1372678..1373586 (+) 909 WP_012117456.1 ketopantoate reductase family protein -
  I5367_RS07185 (I5367_07185) - 1373618..1374850 (-) 1233 WP_012117457.1 aminopeptidase -
  I5367_RS07190 (I5367_07190) - 1374951..1375085 (-) 135 WP_012117458.1 protein YkpC -
  I5367_RS07195 (I5367_07195) mreBH 1375157..1376164 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  I5367_RS07200 (I5367_07200) abrB 1376435..1376719 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  I5367_RS07205 (I5367_07205) - 1376892..1378196 (+) 1305 WP_007409646.1 ATP-binding protein -
  I5367_RS07210 (I5367_07210) - 1378198..1379025 (+) 828 WP_012117459.1 gamma-glutamylcyclotransferase -
  I5367_RS07215 (I5367_07215) ktrC 1379066..1379731 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  I5367_RS07220 (I5367_07220) ade 1379880..1381613 (+) 1734 WP_012117460.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=511757 I5367_RS07200 WP_003154557.1 1376435..1376719(+) (abrB) [Bacillus amyloliquefaciens strain DGL1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=511757 I5367_RS07200 WP_003154557.1 1376435..1376719(+) (abrB) [Bacillus amyloliquefaciens strain DGL1]
ATGAAATCGATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543