Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   I5367_RS01995 Genome accession   NZ_CP065539
Coordinates   395808..396956 (+) Length   382 a.a.
NCBI ID   WP_012116798.1    Uniprot ID   A3KLC9
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 390808..401956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS01975 (I5367_01975) - 391205..391888 (-) 684 WP_012116795.1 ABC transporter ATP-binding protein -
  I5367_RS01980 (I5367_01980) - 391903..393339 (-) 1437 WP_012116796.1 ABC transporter permease -
  I5367_RS01985 (I5367_01985) - 393552..394235 (+) 684 WP_007410267.1 response regulator transcription factor -
  I5367_RS01990 (I5367_01990) - 394222..395655 (+) 1434 WP_162303988.1 sensor histidine kinase -
  I5367_RS01995 (I5367_01995) rapC 395808..396956 (+) 1149 WP_012116798.1 Rap family tetratricopeptide repeat protein Regulator
  I5367_RS02000 (I5367_02000) phrC 396940..397059 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  I5367_RS02005 (I5367_02005) - 397208..397318 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  I5367_RS02010 (I5367_02010) - 397398..398762 (-) 1365 WP_012116801.1 aspartate kinase -
  I5367_RS02015 (I5367_02015) ceuB 399176..400129 (+) 954 WP_012116802.1 ABC transporter permease Machinery gene
  I5367_RS02020 (I5367_02020) - 400119..401066 (+) 948 WP_012116803.1 iron chelate uptake ABC transporter family permease subunit -
  I5367_RS02025 (I5367_02025) - 401060..401818 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45490.68 Da        Isoelectric Point: 4.9916

>NTDB_id=511735 I5367_RS01995 WP_012116798.1 395808..396956(+) (rapC) [Bacillus amyloliquefaciens strain DGL1]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRAQYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=511735 I5367_RS01995 WP_012116798.1 395808..396956(+) (rapC) [Bacillus amyloliquefaciens strain DGL1]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCAGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.461

100

0.825
  rapF Bacillus subtilis subsp. subtilis str. 168

56.842

99.476

0.565