Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | I4Q39_RS13510 | Genome accession | NZ_CP065535 |
| Coordinates | 2815179..2816549 (-) | Length | 456 a.a. |
| NCBI ID | WP_016177769.1 | Uniprot ID | - |
| Organism | Enterococcus durans strain KCTC 13289 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2804276..2866909 | 2815179..2816549 | within | 0 |
Gene organization within MGE regions
Location: 2804276..2866909
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I4Q39_RS13450 (I4Q39_13450) | mscL | 2804598..2805071 (+) | 474 | WP_005875108.1 | large conductance mechanosensitive channel protein MscL | - |
| I4Q39_RS13455 (I4Q39_13455) | - | 2805194..2805628 (-) | 435 | WP_005875107.1 | GNAT family N-acetyltransferase | - |
| I4Q39_RS13460 (I4Q39_13460) | - | 2805722..2805967 (-) | 246 | WP_005875105.1 | Veg family protein | - |
| I4Q39_RS13465 (I4Q39_13465) | - | 2806081..2806659 (-) | 579 | WP_005875103.1 | RNA polymerase sigma factor | - |
| I4Q39_RS13470 (I4Q39_13470) | - | 2806792..2808089 (+) | 1298 | Protein_2674 | ISL3 family transposase | - |
| I4Q39_RS13475 (I4Q39_13475) | - | 2808251..2808781 (-) | 531 | WP_005876890.1 | NYN domain-containing protein | - |
| I4Q39_RS13480 (I4Q39_13480) | rlmB | 2808785..2809648 (-) | 864 | WP_016177768.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| I4Q39_RS13485 (I4Q39_13485) | - | 2809641..2810036 (-) | 396 | WP_005876893.1 | Mini-ribonuclease 3 | - |
| I4Q39_RS13490 (I4Q39_13490) | cysS | 2810033..2811445 (-) | 1413 | WP_005876895.1 | cysteine--tRNA ligase | - |
| I4Q39_RS13495 (I4Q39_13495) | epsC | 2811442..2811978 (-) | 537 | WP_005876897.1 | serine O-acetyltransferase EpsC | - |
| I4Q39_RS13500 (I4Q39_13500) | gltX | 2812300..2813760 (-) | 1461 | WP_060789778.1 | glutamate--tRNA ligase | - |
| I4Q39_RS13505 (I4Q39_13505) | - | 2813997..2815142 (-) | 1146 | WP_005876901.1 | PIN/TRAM domain-containing protein | - |
| I4Q39_RS13510 (I4Q39_13510) | radA | 2815179..2816549 (-) | 1371 | WP_016177769.1 | DNA repair protein RadA | Machinery gene |
| I4Q39_RS13515 (I4Q39_13515) | - | 2816597..2817130 (-) | 534 | WP_060789779.1 | dUTP diphosphatase | - |
| I4Q39_RS13520 (I4Q39_13520) | proB | 2817337..2818143 (+) | 807 | WP_005876906.1 | glutamate 5-kinase | - |
| I4Q39_RS13525 (I4Q39_13525) | - | 2818140..2819384 (+) | 1245 | WP_005876908.1 | glutamate-5-semialdehyde dehydrogenase | - |
| I4Q39_RS13530 (I4Q39_13530) | - | 2819482..2819826 (+) | 345 | WP_016177770.1 | hypothetical protein | - |
| I4Q39_RS13535 (I4Q39_13535) | - | 2820221..2820532 (-) | 312 | WP_016177771.1 | hypothetical protein | - |
| I4Q39_RS13540 (I4Q39_13540) | - | 2820650..2821843 (-) | 1194 | WP_005876916.1 | MFS transporter | - |
| I4Q39_RS13545 (I4Q39_13545) | - | 2821958..2822473 (+) | 516 | WP_005876918.1 | PadR family transcriptional regulator | - |
| I4Q39_RS13550 (I4Q39_13550) | - | 2822591..2823031 (-) | 441 | WP_005876920.1 | DUF2798 domain-containing protein | - |
| I4Q39_RS13555 (I4Q39_13555) | - | 2823382..2824656 (-) | 1275 | WP_005876922.1 | glycoside hydrolase family 73 protein | - |
| I4Q39_RS13560 (I4Q39_13560) | - | 2825130..2825975 (-) | 846 | WP_005879083.1 | SDR family oxidoreductase | - |
| I4Q39_RS13565 (I4Q39_13565) | - | 2826102..2826569 (+) | 468 | WP_005879081.1 | Rrf2 family transcriptional regulator | - |
| I4Q39_RS13570 (I4Q39_13570) | - | 2826697..2828289 (+) | 1593 | WP_016177773.1 | hypothetical protein | - |
| I4Q39_RS13575 (I4Q39_13575) | - | 2828513..2829766 (+) | 1254 | WP_005879078.1 | ROK family transcriptional regulator | - |
| I4Q39_RS13580 (I4Q39_13580) | - | 2830066..2830956 (-) | 891 | WP_016177774.1 | phytoene/squalene synthase family protein | - |
| I4Q39_RS13585 (I4Q39_13585) | - | 2830940..2832432 (-) | 1493 | Protein_2697 | phytoene desaturase family protein | - |
| I4Q39_RS13590 (I4Q39_13590) | - | 2832699..2833667 (-) | 969 | WP_005879075.1 | tRNA dihydrouridine synthase | - |
| I4Q39_RS13595 (I4Q39_13595) | - | 2833776..2834297 (-) | 522 | WP_005879074.1 | GNAT family N-acetyltransferase | - |
| I4Q39_RS13600 (I4Q39_13600) | - | 2834546..2835316 (-) | 771 | WP_005879072.1 | ABC transporter permease | - |
| I4Q39_RS13605 (I4Q39_13605) | - | 2835309..2836244 (-) | 936 | WP_005879070.1 | ABC transporter ATP-binding protein | - |
| I4Q39_RS13610 (I4Q39_13610) | - | 2836950..2838599 (-) | 1650 | WP_060789781.1 | MutS-related protein | - |
| I4Q39_RS13620 (I4Q39_13620) | - | 2840248..2840397 (-) | 150 | Protein_2704 | ISL3 family transposase | - |
| I4Q39_RS13625 (I4Q39_13625) | rpsI | 2840793..2841185 (-) | 393 | WP_005881201.1 | 30S ribosomal protein S9 | - |
| I4Q39_RS13630 (I4Q39_13630) | rplM | 2841201..2841629 (-) | 429 | WP_034865780.1 | 50S ribosomal protein L13 | - |
| I4Q39_RS13635 (I4Q39_13635) | - | 2842008..2843222 (+) | 1215 | WP_005881197.1 | argininosuccinate synthase | - |
| I4Q39_RS13640 (I4Q39_13640) | argH | 2843280..2844662 (+) | 1383 | WP_005881195.1 | argininosuccinate lyase | - |
| I4Q39_RS13645 (I4Q39_13645) | - | 2844860..2845327 (-) | 468 | WP_005881193.1 | Dps family protein | - |
| I4Q39_RS13650 (I4Q39_13650) | - | 2845519..2847051 (-) | 1533 | WP_016177779.1 | gluconokinase | - |
| I4Q39_RS13655 (I4Q39_13655) | - | 2847128..2847811 (+) | 684 | WP_016177780.1 | prepilin peptidase | - |
| I4Q39_RS13660 (I4Q39_13660) | msrA | 2848025..2848558 (-) | 534 | WP_005881187.1 | peptide-methionine (S)-S-oxide reductase MsrA | - |
| I4Q39_RS13665 (I4Q39_13665) | rpoC | 2849059..2852709 (-) | 3651 | WP_016177781.1 | DNA-directed RNA polymerase subunit beta' | - |
| I4Q39_RS13670 (I4Q39_13670) | rpoB | 2852789..2856406 (-) | 3618 | WP_005881184.1 | DNA-directed RNA polymerase subunit beta | - |
| I4Q39_RS13675 (I4Q39_13675) | - | 2857146..2858114 (+) | 969 | WP_016177782.1 | ABC transporter substrate-binding protein | - |
| I4Q39_RS13680 (I4Q39_13680) | - | 2858133..2859038 (+) | 906 | WP_005881180.1 | ABC transporter permease | - |
| I4Q39_RS13685 (I4Q39_13685) | - | 2859041..2859844 (+) | 804 | WP_005881178.1 | ABC transporter ATP-binding protein | - |
| I4Q39_RS13690 (I4Q39_13690) | - | 2860019..2860990 (+) | 972 | WP_016177783.1 | biotin--[acetyl-CoA-carboxylase] ligase | - |
| I4Q39_RS13695 (I4Q39_13695) | - | 2862039..2862668 (+) | 630 | WP_016177784.1 | hypothetical protein | - |
| I4Q39_RS13700 (I4Q39_13700) | - | 2863379..2864368 (-) | 990 | WP_005875235.1 | polyprenyl synthetase family protein | - |
| I4Q39_RS13705 (I4Q39_13705) | - | 2864391..2864957 (-) | 567 | WP_005875234.1 | Gx transporter family protein | - |
| I4Q39_RS13710 (I4Q39_13710) | - | 2864970..2865380 (-) | 411 | WP_005875232.1 | NusG domain II-containing protein | - |
Sequence
Protein
Download Length: 456 a.a. Molecular weight: 49885.50 Da Isoelectric Point: 7.3892
>NTDB_id=511725 I4Q39_RS13510 WP_016177769.1 2815179..2816549(-) (radA) [Enterococcus durans strain KCTC 13289]
MAKKAKVQFVCQNCGYVSPKFLGRCPNCGKWNTMVEEIEQDTSDRRTRTSLTGEKAKPTKIAEVTPKKESRVKTKLAELN
RVLGGGVVPGSMILIGGDPGIGKSTLLLQVSQQLADIGGKVLYVSGEESAEQIKLRAERLGSIDTEFYLYAETDMNEISR
AIEQISPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEERLEGATGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAISIASSYKEKGTQPTECFIGEIGLTG
EIRRVSHIEQRVKEVQKLGFTKVYLPKNNLGGWQPPQGIEVVGVATLAETLKRVFR
MAKKAKVQFVCQNCGYVSPKFLGRCPNCGKWNTMVEEIEQDTSDRRTRTSLTGEKAKPTKIAEVTPKKESRVKTKLAELN
RVLGGGVVPGSMILIGGDPGIGKSTLLLQVSQQLADIGGKVLYVSGEESAEQIKLRAERLGSIDTEFYLYAETDMNEISR
AIEQISPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEERLEGATGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAISIASSYKEKGTQPTECFIGEIGLTG
EIRRVSHIEQRVKEVQKLGFTKVYLPKNNLGGWQPPQGIEVVGVATLAETLKRVFR
Nucleotide
Download Length: 1371 bp
>NTDB_id=511725 I4Q39_RS13510 WP_016177769.1 2815179..2816549(-) (radA) [Enterococcus durans strain KCTC 13289]
ATGGCAAAAAAAGCAAAAGTGCAATTTGTCTGTCAGAACTGTGGGTATGTTTCGCCTAAATTTTTAGGGCGATGCCCGAA
TTGTGGAAAATGGAATACGATGGTGGAAGAAATTGAGCAGGATACTAGCGACCGCAGAACTAGGACGAGCTTAACTGGTG
AAAAAGCGAAGCCCACTAAAATTGCGGAAGTCACCCCCAAAAAAGAATCACGGGTAAAAACGAAACTTGCTGAATTGAAT
CGAGTATTAGGCGGCGGTGTTGTTCCAGGATCAATGATCTTGATCGGTGGAGATCCAGGTATCGGGAAATCGACGTTGTT
ATTACAAGTTTCACAACAACTTGCAGACATTGGTGGTAAAGTATTGTATGTATCTGGTGAAGAAAGTGCTGAGCAAATCA
AGCTACGTGCGGAACGTCTAGGATCGATCGACACGGAATTTTATTTATACGCAGAAACAGATATGAATGAGATCAGCCGA
GCAATTGAACAAATCTCTCCTGATTATGTCATTATTGATTCCATCCAAACAATGACACAACCGGATATCACGAGTGTAGC
AGGTAGCGTGAGTCAAGTGCGGGAAACGACTGCAGAATTATTAAAAATTGCCAAAACGAACGGTATCGCTATTTTTATCG
TTGGACATGTCACAAAAGAAGGGTCGATTGCAGGTCCAAGAATGCTCGAACACATGGTAGATACGGTTCTTTATTTCGAA
GGAGAACAACACCATAGTTTTCGTATTTTAAGAGCGGTGAAGAATCGATTTGGTTCGACAAATGAAATTGGTATTTTTGA
GATGCATGAGCATGGATTGGAGGAAGTGGCGAATCCTTCGCAGATTTTCTTAGAAGAGCGCTTAGAAGGCGCAACCGGTT
CAGCCATCGTGGTGGCGATGGAAGGCACTCGTCCTATTTTAGTAGAGATCCAAGCGCTTGTGACACCCACGATGTTCGGA
AACGCAAAACGAACAACGACTGGCTTAGATTTTAACCGAGTCTCACTGATCATGGCTGTCCTAGAAAAAAGAGCAGGCTT
ATTGTTGCAGAATCAAGATGCTTACTTAAAAGCGGCTGGTGGGGTAAAATTAAATGAGCCGGCCATTGATTTAGCTATTG
CGATCAGTATTGCTTCGAGTTACAAAGAAAAAGGGACACAGCCAACAGAATGCTTTATTGGCGAAATCGGTTTGACTGGT
GAGATCAGACGGGTAAGTCATATTGAGCAGAGGGTCAAAGAAGTACAGAAATTAGGATTCACAAAAGTGTATCTGCCAAA
AAATAATCTTGGCGGATGGCAACCGCCTCAGGGAATCGAAGTAGTGGGCGTAGCCACATTAGCTGAAACATTAAAACGTG
TGTTTCGCTAA
ATGGCAAAAAAAGCAAAAGTGCAATTTGTCTGTCAGAACTGTGGGTATGTTTCGCCTAAATTTTTAGGGCGATGCCCGAA
TTGTGGAAAATGGAATACGATGGTGGAAGAAATTGAGCAGGATACTAGCGACCGCAGAACTAGGACGAGCTTAACTGGTG
AAAAAGCGAAGCCCACTAAAATTGCGGAAGTCACCCCCAAAAAAGAATCACGGGTAAAAACGAAACTTGCTGAATTGAAT
CGAGTATTAGGCGGCGGTGTTGTTCCAGGATCAATGATCTTGATCGGTGGAGATCCAGGTATCGGGAAATCGACGTTGTT
ATTACAAGTTTCACAACAACTTGCAGACATTGGTGGTAAAGTATTGTATGTATCTGGTGAAGAAAGTGCTGAGCAAATCA
AGCTACGTGCGGAACGTCTAGGATCGATCGACACGGAATTTTATTTATACGCAGAAACAGATATGAATGAGATCAGCCGA
GCAATTGAACAAATCTCTCCTGATTATGTCATTATTGATTCCATCCAAACAATGACACAACCGGATATCACGAGTGTAGC
AGGTAGCGTGAGTCAAGTGCGGGAAACGACTGCAGAATTATTAAAAATTGCCAAAACGAACGGTATCGCTATTTTTATCG
TTGGACATGTCACAAAAGAAGGGTCGATTGCAGGTCCAAGAATGCTCGAACACATGGTAGATACGGTTCTTTATTTCGAA
GGAGAACAACACCATAGTTTTCGTATTTTAAGAGCGGTGAAGAATCGATTTGGTTCGACAAATGAAATTGGTATTTTTGA
GATGCATGAGCATGGATTGGAGGAAGTGGCGAATCCTTCGCAGATTTTCTTAGAAGAGCGCTTAGAAGGCGCAACCGGTT
CAGCCATCGTGGTGGCGATGGAAGGCACTCGTCCTATTTTAGTAGAGATCCAAGCGCTTGTGACACCCACGATGTTCGGA
AACGCAAAACGAACAACGACTGGCTTAGATTTTAACCGAGTCTCACTGATCATGGCTGTCCTAGAAAAAAGAGCAGGCTT
ATTGTTGCAGAATCAAGATGCTTACTTAAAAGCGGCTGGTGGGGTAAAATTAAATGAGCCGGCCATTGATTTAGCTATTG
CGATCAGTATTGCTTCGAGTTACAAAGAAAAAGGGACACAGCCAACAGAATGCTTTATTGGCGAAATCGGTTTGACTGGT
GAGATCAGACGGGTAAGTCATATTGAGCAGAGGGTCAAAGAAGTACAGAAATTAGGATTCACAAAAGTGTATCTGCCAAA
AAATAATCTTGGCGGATGGCAACCGCCTCAGGGAATCGAAGTAGTGGGCGTAGCCACATTAGCTGAAACATTAAAACGTG
TGTTTCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus mitis NCTC 12261 |
74.505 |
99.781 |
0.743 |
| radA | Streptococcus mitis SK321 |
74.505 |
99.781 |
0.743 |
| radA | Streptococcus pneumoniae Rx1 |
74.286 |
99.781 |
0.741 |
| radA | Streptococcus pneumoniae D39 |
74.286 |
99.781 |
0.741 |
| radA | Streptococcus pneumoniae R6 |
74.286 |
99.781 |
0.741 |
| radA | Streptococcus pneumoniae TIGR4 |
74.286 |
99.781 |
0.741 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
67.406 |
98.904 |
0.667 |