Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I4Q39_RS03920 Genome accession   NZ_CP065535
Coordinates   832692..834374 (+) Length   560 a.a.
NCBI ID   WP_016177069.1    Uniprot ID   A0AB36S5L9
Organism   Enterococcus durans strain KCTC 13289     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 827692..839374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4Q39_RS03890 (I4Q39_03890) - 827995..828840 (+) 846 WP_016177068.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  I4Q39_RS03895 (I4Q39_03895) xseA 828841..830202 (+) 1362 WP_005881072.1 exodeoxyribonuclease VII large subunit -
  I4Q39_RS03900 (I4Q39_03900) - 830183..830407 (+) 225 WP_005881069.1 exodeoxyribonuclease VII small subunit -
  I4Q39_RS03905 (I4Q39_03905) - 830407..831291 (+) 885 WP_005881067.1 polyprenyl synthetase family protein -
  I4Q39_RS03910 (I4Q39_03910) - 831306..832124 (+) 819 WP_005881064.1 TlyA family RNA methyltransferase -
  I4Q39_RS03915 (I4Q39_03915) argR 832225..832674 (+) 450 WP_005881063.1 arginine repressor -
  I4Q39_RS03920 (I4Q39_03920) recN 832692..834374 (+) 1683 WP_016177069.1 DNA repair protein RecN Machinery gene
  I4Q39_RS03925 (I4Q39_03925) - 834557..834673 (-) 117 WP_005881061.1 DUF4044 domain-containing protein -
  I4Q39_RS03930 (I4Q39_03930) - 834745..835701 (-) 957 WP_016177070.1 magnesium transporter CorA family protein -
  I4Q39_RS03935 (I4Q39_03935) - 835922..836290 (+) 369 WP_016177071.1 DUF3397 domain-containing protein -
  I4Q39_RS03940 (I4Q39_03940) mraZ 836463..836894 (+) 432 WP_025481366.1 division/cell wall cluster transcriptional repressor MraZ -
  I4Q39_RS03945 (I4Q39_03945) rsmH 836914..837873 (+) 960 WP_005881055.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  I4Q39_RS03950 (I4Q39_03950) ftsL 837878..838273 (+) 396 WP_005881053.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63345.70 Da        Isoelectric Point: 4.6658

>NTDB_id=511699 I4Q39_RS03920 WP_016177069.1 832692..834374(+) (recN) [Enterococcus durans strain KCTC 13289]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRSSSDYIRQGADKCILEGLFEWPKQDGFSALM
NELGIESDGDNLIVRRDMSLTGKNICRVNGHIVTLANLRKIGSYLVDIQGQNEHQELLQTEAHLVLLDRFGDNEFQRKKK
NYQKEFSRYRELERQVRKIQKNEKSFVQRIDMLHFQQEEIAAAQLEVGEEEQLSEEREKLSNYQKIVDSLASGYSALSGE
ERSSVDNVGLAVAELQSIAHLDNEYEAIFENVQSAYYLLQDAIGDMSRQIDLLELDENRLEEVNQRLELIHQLKRKYGES
IEAILNYYDDITQELASSDFSEGQLEKMKSELAEKEEKLQKQAVELHEIRKKIAKGLEQSILKELKSLYMENTEFEVRFS
KSDKAQLDMNGFDQVEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISRYSQVLCITHLPQVAAVADYQYYIKKDVIKGRTQTSVAELAPAQREEEIARMLAGSEITPLTMEHAKELLRLAKQD

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=511699 I4Q39_RS03920 WP_016177069.1 832692..834374(+) (recN) [Enterococcus durans strain KCTC 13289]
ATGTTACAAGAAATCAGTATTACTAATTTTGCGATTATTCCTGAACTGCGGTTGTCTTTTCATGAGGGAATGACGGCACT
CACAGGTGAAACAGGCGCAGGAAAATCAATTATTATTGATGCTCTTGGGCTGTTGGCAGGAGGAAGAAGCTCAAGTGACT
ATATCCGACAAGGTGCAGATAAGTGTATTCTGGAAGGTTTATTTGAGTGGCCTAAACAAGACGGTTTTTCTGCATTGATG
AATGAGTTAGGGATCGAATCTGATGGAGACAATCTGATTGTTCGAAGAGATATGTCTTTGACAGGGAAAAATATTTGTCG
TGTCAATGGGCACATCGTAACATTAGCTAATCTAAGAAAAATAGGTAGTTATTTGGTAGATATCCAAGGCCAAAATGAAC
ATCAGGAATTGTTACAAACAGAAGCACACTTAGTTTTACTCGATCGTTTTGGCGATAATGAATTTCAGCGTAAGAAGAAA
AATTATCAGAAAGAGTTTTCGCGCTACCGCGAACTTGAACGGCAAGTTCGTAAGATCCAGAAAAATGAAAAATCTTTTGT
CCAACGGATCGACATGCTTCATTTTCAGCAAGAAGAAATCGCTGCGGCACAATTAGAAGTAGGCGAAGAAGAACAGTTAA
GTGAAGAGCGAGAAAAATTAAGTAATTATCAAAAAATAGTGGATAGCTTAGCTAGTGGCTATAGTGCGCTGAGCGGGGAA
GAGCGGAGTAGTGTAGACAATGTAGGATTGGCAGTAGCTGAGCTGCAAAGTATCGCGCACTTGGATAATGAGTACGAGGC
GATTTTTGAAAATGTCCAAAGCGCCTATTATTTATTGCAAGATGCAATCGGCGATATGAGTCGTCAAATCGACTTGCTAG
AGTTAGATGAGAATCGCTTAGAAGAAGTGAATCAACGATTAGAGCTGATCCATCAATTAAAGCGTAAATATGGGGAATCA
ATCGAAGCCATCTTGAACTATTATGATGATATCACTCAGGAACTAGCCTCTTCCGATTTTTCCGAAGGACAACTTGAAAA
AATGAAAAGTGAACTGGCTGAAAAAGAAGAGAAACTTCAGAAACAGGCAGTAGAATTACATGAGATACGAAAGAAAATCG
CTAAAGGATTAGAGCAATCTATCTTAAAAGAATTAAAAAGTCTTTATATGGAAAATACTGAATTCGAAGTACGCTTTTCA
AAATCTGACAAGGCACAACTAGATATGAATGGATTTGACCAAGTGGAGTTCTACATAACCACGAATCCTGGAGAGCCTTT
GAAACCTTTAGTCAAAGTAGCTTCTGGCGGAGAGCTTTCTCGGATGTTATTAGCATTGAAGACGATCTTTTCTTCTGAAC
AAGGAGTAACTAGTATTATTTTTGATGAAGTAGATACAGGGGTCAGTGGAAGAGTCGCACAAGCAATCGCAGATAAGATC
TCACAAATCTCACGTTATTCACAGGTGTTATGTATTACACATCTTCCTCAAGTAGCAGCCGTGGCTGACTATCAGTATTA
CATTAAAAAAGATGTCATCAAAGGGCGCACTCAAACCTCTGTAGCAGAATTGGCGCCAGCACAGCGTGAAGAAGAAATTG
CACGGATGTTGGCAGGAAGTGAAATCACCCCTTTAACAATGGAACATGCAAAAGAATTACTACGCTTAGCGAAACAAGAC
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.301

100

0.504