Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I4Q39_RS02440 Genome accession   NZ_CP065535
Coordinates   514531..516342 (+) Length   603 a.a.
NCBI ID   WP_016176915.1    Uniprot ID   A0AB36S4Q4
Organism   Enterococcus durans strain KCTC 13289     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 509531..521342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4Q39_RS02420 (I4Q39_02420) spxA 510941..511339 (+) 399 WP_005877288.1 transcriptional regulator SpxA -
  I4Q39_RS02425 (I4Q39_02425) - 511494..512453 (+) 960 WP_016176468.1 IS30-like element IS6770 family transposase -
  I4Q39_RS02430 (I4Q39_02430) - 512670..513320 (+) 651 WP_005879417.1 adaptor protein MecA -
  I4Q39_RS02435 (I4Q39_02435) - 513420..514229 (+) 810 WP_016176914.1 competence protein CoiA -
  I4Q39_RS02440 (I4Q39_02440) pepF 514531..516342 (+) 1812 WP_016176915.1 oligoendopeptidase F Regulator
  I4Q39_RS02445 (I4Q39_02445) - 516956..517150 (+) 195 WP_005879411.1 hypothetical protein -
  I4Q39_RS02450 (I4Q39_02450) - 517119..517526 (+) 408 WP_005879409.1 DUF4809 family protein -
  I4Q39_RS02455 (I4Q39_02455) - 517694..518881 (-) 1188 WP_005879407.1 galactokinase -
  I4Q39_RS02460 (I4Q39_02460) - 518884..519918 (-) 1035 WP_005879405.1 galactose-1-epimerase -
  I4Q39_RS02465 (I4Q39_02465) - 520169..521074 (+) 906 WP_005879403.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69888.40 Da        Isoelectric Point: 4.8243

>NTDB_id=511697 I4Q39_RS02440 WP_016176915.1 514531..516342(+) (pepF) [Enterococcus durans strain KCTC 13289]
MSETTKLPKREELPEELTWDLTKIFANDQEFDQAYEKLNEELKNSDKYKGTLANSATEFLDALEFVLDVYRKIERIYVYS
SMKNDQDTANTTYQALYARSGSLLAKVSEAISWYEPEVLQLSDDQIWQYFEQEPKLELYRHYIQQMVDNRAHVLSADQES
LLAGAGEIFGSSSDIFAVLNNADLEFPTITDENGKAIQLSHGVYRQLMESTDRNVREAAFKGFFSVYEQFKNTFASTLSA
HIKGHNYKAKIRHYKSAREASLSNNHVPESVYDTLVEVVNKNLPLLHRYMSVRKRLLGVDKLHMYDLYTPVLGEAPIKFT
YEEAKAKALEALKPMGEEYLTVVEKAFSERWIDVIENKGKRSGAYSSGSYDTNPYILLNWHDALDQLFTLVHEMGHSVHS
YFTRSNQPYVYGDYPIFLAEIASTTNENILTEYLLETEEDPRVRAYVLNHYLDGFKGTIFRQTQFAEFEHFMHEEDAKGI
PLTSEYLSENYGKLNTKYYGPAVEEDPEIKYEWSRIPHFYYNYYVYQYSTGFSAASALAKKIWTKEPQALENYLTYLKSG
SSDYPVEVMKKAGVDMTKANYIEDAMVIFEKRLNELEELVEKL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=511697 I4Q39_RS02440 WP_016176915.1 514531..516342(+) (pepF) [Enterococcus durans strain KCTC 13289]
ATGAGTGAAACGACCAAATTACCAAAAAGAGAAGAATTACCTGAAGAACTAACATGGGACTTAACGAAAATCTTTGCAAA
CGATCAAGAATTCGATCAGGCTTATGAAAAATTGAATGAAGAATTAAAAAATTCTGATAAATATAAAGGGACTTTGGCAA
ATAGTGCCACAGAATTTTTGGATGCACTTGAATTTGTTTTAGATGTTTATCGAAAAATCGAACGGATCTATGTTTATTCT
AGTATGAAAAATGATCAAGATACTGCAAATACAACCTATCAAGCATTGTATGCCCGATCTGGCAGTTTATTAGCAAAAGT
GAGTGAAGCTATTTCGTGGTACGAACCAGAAGTACTTCAACTTTCAGATGACCAAATCTGGCAGTACTTTGAACAAGAAC
CAAAACTAGAACTTTATCGCCATTATATCCAACAAATGGTAGATAATAGAGCGCATGTCCTGTCTGCTGATCAAGAGTCT
TTACTTGCAGGAGCAGGCGAAATATTTGGTTCCTCTAGTGATATCTTTGCGGTATTGAACAATGCTGATCTAGAGTTTCC
TACGATCACAGATGAAAATGGAAAAGCAATCCAACTTTCTCACGGTGTTTACAGACAGTTAATGGAAAGTACGGATCGCA
ATGTTCGCGAAGCAGCATTCAAAGGTTTTTTCAGTGTATATGAACAATTTAAAAATACATTTGCATCTACATTGAGTGCG
CATATCAAAGGTCATAATTATAAAGCAAAAATCCGTCATTACAAGTCAGCTCGTGAAGCTTCTTTAAGTAACAACCATGT
TCCAGAAAGCGTGTATGATACATTAGTGGAAGTTGTCAATAAAAACTTGCCATTATTACACCGTTATATGTCTGTTCGTA
AACGTCTTTTAGGGGTAGACAAACTACACATGTACGATCTATATACACCAGTTCTAGGTGAAGCACCAATAAAGTTTACC
TATGAAGAAGCAAAAGCAAAAGCATTGGAAGCCTTAAAACCAATGGGTGAAGAATATCTGACAGTCGTTGAAAAAGCCTT
TTCTGAGCGTTGGATCGATGTAATAGAAAATAAAGGCAAACGTAGTGGCGCGTATTCTTCAGGAAGCTATGATACAAATC
CATACATTCTATTGAATTGGCATGATGCCTTGGATCAACTATTTACATTGGTACATGAAATGGGACATAGTGTCCACAGT
TACTTCACTCGTTCAAACCAACCTTATGTGTATGGGGATTATCCGATTTTCTTAGCTGAAATTGCATCAACAACGAATGA
AAATATTTTAACGGAGTACTTGTTGGAAACAGAAGAAGATCCTCGAGTACGGGCGTATGTTTTGAATCATTACCTTGATG
GATTCAAAGGTACGATATTCCGTCAAACTCAATTTGCAGAATTTGAACATTTTATGCATGAAGAGGATGCAAAAGGTATT
CCGTTGACAAGTGAATACTTGAGTGAAAATTATGGGAAACTGAATACTAAATATTACGGACCAGCTGTAGAAGAAGATCC
AGAAATCAAGTATGAATGGTCACGTATCCCTCATTTCTATTACAATTACTATGTTTATCAATATTCGACTGGATTTTCAG
CTGCCTCTGCTTTAGCGAAGAAAATCTGGACGAAAGAACCACAAGCATTAGAAAACTACCTTACCTATCTGAAGTCTGGA
AGTAGTGATTATCCCGTTGAAGTAATGAAAAAAGCGGGTGTTGATATGACGAAAGCAAATTATATCGAAGATGCAATGGT
AATATTTGAAAAACGCTTGAATGAACTAGAAGAATTAGTAGAAAAATTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.661

98.342

0.557