Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   KU511_RS11105 Genome accession   NZ_CP077928
Coordinates   2217222..2217599 (-) Length   125 a.a.
NCBI ID   WP_001621795.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2212222..2222599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU511_RS11080 (KU511_11040) - 2212602..2213588 (+) 987 WP_000662031.1 tRNA dihydrouridine synthase -
  KU511_RS11085 (KU511_11045) - 2213649..2214221 (-) 573 WP_000540837.1 TetR/AcrR family transcriptional regulator -
  KU511_RS11090 (KU511_11050) - 2214369..2215886 (+) 1518 WP_225798399.1 MDR family MFS transporter -
  KU511_RS11095 (KU511_11055) - 2215888..2216445 (+) 558 WP_000633423.1 DUF4811 domain-containing protein -
  KU511_RS11100 (KU511_11060) - 2216687..2217160 (-) 474 WP_000455984.1 GNAT family N-acetyltransferase -
  KU511_RS11105 (KU511_11065) lrpC 2217222..2217599 (-) 378 WP_001621795.1 Lrp/AsnC family transcriptional regulator Machinery gene
  KU511_RS14225 - 2219557..2219892 (+) 336 WP_374057280.1 transposase -
  KU511_RS11120 (KU511_11080) - 2219884..2220159 (-) 276 WP_072468794.1 site-specific DNA-methyltransferase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14603.72 Da        Isoelectric Point: 4.7711

>NTDB_id=511679 KU511_RS11105 WP_001621795.1 2217222..2217599(-) (lrpC) [Staphylococcus aureus strain 196]
MLNNSRITINELSKQVNLSAPAVRERVNKLEDQGIIKGYTINIDYKELGYDVEILIELTIKNNRYKDFKEFISKQDNVEF
CYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQIKCQFIFSSVV

Nucleotide


Download         Length: 378 bp        

>NTDB_id=511679 KU511_RS11105 WP_001621795.1 2217222..2217599(-) (lrpC) [Staphylococcus aureus strain 196]
TTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGTAAACAAGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGT
AAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTAACATAGATTATAAGGAATTAGGTTACGATGTAGAAA
TATTAATTGAGTTAACTATAAAGAATAATAGATACAAAGATTTTAAAGAATTTATTTCAAAACAAGATAATGTTGAGTTT
TGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCGGTTGGAAAATATGGATGAAGTAGAAACATTTGTTGA
TACCATACAGCCATATGGGCAGATAAAATGTCAGTTTATCTTTTCATCAGTTGTCTAA

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(56-121)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

42.975

96.8

0.416