Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   KU504_RS12615 Genome accession   NZ_CP077926
Coordinates   2541367..2544195 (-) Length   942 a.a.
NCBI ID   WP_000662699.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 197     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2536367..2549195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU504_RS12595 (KU504_12555) - 2537273..2538712 (-) 1440 WP_000057562.1 tetratricopeptide repeat protein -
  KU504_RS12600 (KU504_12560) - 2538720..2539205 (-) 486 WP_001224792.1 acyltransferase -
  KU504_RS12605 (KU504_12565) lgt 2539213..2540052 (-) 840 WP_000513297.1 prolipoprotein diacylglyceryl transferase -
  KU504_RS12610 (KU504_12570) hprK 2540058..2540990 (-) 933 WP_000958224.1 HPr(Ser) kinase/phosphatase -
  KU504_RS12615 (KU504_12575) uvrA 2541367..2544195 (-) 2829 WP_000662699.1 excinuclease ABC subunit UvrA Machinery gene
  KU504_RS12620 (KU504_12580) uvrB 2544203..2546188 (-) 1986 WP_000229257.1 excinuclease ABC subunit UvrB Machinery gene
  KU504_RS12625 (KU504_12585) - 2546457..2546693 (-) 237 WP_031928156.1 CsbA family protein -
  KU504_RS12630 (KU504_12590) - 2546690..2547340 (-) 651 WP_000538142.1 YfbR-like 5'-deoxynucleotidase -
  KU504_RS12635 (KU504_12595) - 2547514..2548353 (-) 840 WP_031928157.1 CHAP domain-containing protein -

Sequence


Protein


Download         Length: 942 a.a.        Molecular weight: 104775.51 Da        Isoelectric Point: 6.4269

>NTDB_id=511592 KU504_RS12615 WP_000662699.1 2541367..2544195(-) (uvrA) [Staphylococcus aureus strain 197]
MKEPSIVVKGARAHNLKNIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEG
LSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHHIEIESQTVQQMVDRIMELETRTKIQLLAPVISHR
KGSHEKLIEDIGKKGYVRLRIDGEIVDVNEVPELDKNKNHTIEVVVDRLVVKEGIETRLADSIETALELSEGQLTVDVID
GEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTL
LKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKY
MTELPCETCHGQRLSREALSVYVGGLNIGEVVEYSISQALNYYKNINLSEQDQAIANQILKEIISRLTFLNNVGLEYLTL
NRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDI
GPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGV
SGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAK
IRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFEN
IPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENG
DTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDK

Nucleotide


Download         Length: 2829 bp        

>NTDB_id=511592 KU504_RS12615 WP_000662699.1 2541367..2544195(-) (uvrA) [Staphylococcus aureus strain 197]
ATGAAAGAACCATCCATAGTAGTTAAAGGTGCACGTGCGCATAACTTGAAAAATATTGATATTGAATTACCGAAAAATAA
ACTAATTGTAATGACTGGATTATCAGGTTCTGGTAAATCTTCTTTAGCATTTGATACGATTTATGCTGAAGGACAACGTC
GTTATGTTGAATCATTAAGTGCTTATGCACGTCAATTTTTAGGACAAATGGACAAACCAGATGTTGATACAATTGAAGGT
TTATCTCCGGCAATATCTATCGATCAAAAAACAACTAGTAAAAATCCAAGATCGACAGTTGCAACGGTAACAGAAATATA
TGATTATATTCGTTTGCTTTATGCACGTGTCGGTAAACCATATTGTCCAAATCATCATATCGAAATTGAATCGCAAACAG
TACAACAAATGGTTGACCGTATTATGGAGTTAGAGACACGGACAAAGATTCAATTATTAGCACCTGTCATCTCTCATCGA
AAAGGTAGTCATGAAAAATTAATCGAAGATATTGGTAAAAAGGGTTATGTGCGTTTACGTATTGATGGAGAAATTGTTGA
TGTAAATGAAGTGCCTGAATTAGATAAAAATAAAAATCATACAATCGAAGTAGTAGTTGATCGTTTAGTGGTGAAAGAAG
GTATTGAGACACGTCTTGCAGACTCTATCGAAACCGCGTTAGAGCTTTCAGAAGGACAATTAACAGTCGATGTCATTGAC
GGGGAAGACCTTAAGTTTTCAGAAAGCCATGCTTGTCCTATATGTGGATTTTCAATCGGAGAGTTAGAACCAAGAATGTT
TAGCTTTAACAGTCCTTTTGGTGCTTGCCCAACATGTGATGGCTTAGGTCAAAAGTTAACAGTCGATGTAGACTTGGTTG
TTCCCGACAAAGATAAGACGCTAAACGAAGGTGCAATAGAACCTTGGATACCGACGAGTTCTGATTTTTATCCAACATTG
TTAAAACGTGTTTGTGAAGTTTATAAAATCAATATGGATAAACCTTTTAAAAAGTTAACAGAACGTCAACGTGATATTTT
ATTGTATGGTTCGGGCGACAAAGAAATTGAATTTACATTTACACAACGTCAAGGTGGTACTAGAAAACGAACAATGGTTT
TCGAGGGTGTAGTTCCTAATATAAGTAGACGATTCCATGAATCTCCTTCAGAATATACACGTGAAATGATGAGTAAATAT
ATGACCGAACTACCTTGTGAAACTTGTCATGGACAACGATTGAGTCGTGAAGCGTTATCTGTTTATGTAGGTGGTTTAAA
TATTGGTGAAGTAGTCGAATACTCAATTAGTCAAGCGCTGAACTATTATAAAAACATTAATTTGTCAGAACAAGATCAAG
CAATTGCAAATCAAATATTGAAAGAAATTATTTCCCGACTCACTTTTTTAAATAATGTGGGACTTGAATATTTAACGCTA
AACAGAGCTTCAGGTACACTTTCAGGTGGTGAAGCACAACGTATTCGATTGGCAACGCAAATTGGGTCACGTTTGACTGG
TGTCTTATATGTATTAGATGAGCCATCAATTGGACTGCATCAAAGAGATAATGATCGATTAATTAATACACTTAAAGAAA
TGAGAGATTTAGGAAATACTTTAATTGTAGTTGAACACGATGATGATACAATGCGTGCGGCTGATTACTTAGTGGACATA
GGGCCTGGTGCTGGTGAGCATGGAGGACAGATTGTGTCTAGTGGTACACCTCAAAAGGTAATGAAAGATAAAAAATCTTT
AACAGGACAATACTTGAGTGGTAAGAAACGTATTGAAGTACCTGAATATCGCAGACCGGCTTCAGATCGTAAAATTTCTA
TACGTGGAGCTAGAAGTAACAACCTTAAAGGCGTTGATGTGGACATACCACTTTCAATCATGACGGTCGTTACAGGTGTA
TCAGGTTCTGGTAAAAGTTCATTAGTAAATGAAGTATTATACAAATCATTAGCTCAAAAAATCAATAAATCTAAAGTAAA
GCCAGGATTGTACGATAAGATTGAAGGTATTGATCAACTTGATAAAATTATTGATATTGATCAATCACCGATAGGTAGAA
CGCCACGCTCTAATCCAGCAACGTATACTGGTGTGTTTGATGATATACGTGATGTGTTTGCGCAAACAAATGAAGCTAAA
ATTCGAGGATATCAAAAAGGTCGTTTTAGTTTTAATGTAAAAGGTGGACGCTGTGAAGCTTGTAAAGGTGACGGTATTAT
TAAAATTGAAATGCATTTTTTACCTGATGTTTATGTACCTTGTGAAGTATGTGATGGTAAACGATACAATCGTGAGACGT
TAGAAGTTACTTATAAAGGTAAAAACATTGCAGACATTTTGGAAATGACTGTTGAAGAAGCAACACAGTTTTTTGAAAAT
ATTCCTAAGATTAAGCGCAAGCTACAAACACTAGTTGATGTTGGCCTTGGATACGTCACATTAGGTCAACAAGCTACAAC
GTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCC
TAGACGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGATTATTAAAAGTATTAAACCGATTAGTTGAAAATGGT
GATACTGTTGTAATTATTGAACATAACCTAGATGTTATCAAAACAGCAGACTATATTATCGACTTAGGTCCTGAAGGTGG
TAGTGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATT
TAAAAGAAGTACTTGAACGAGATAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

67.306

99.682

0.671

  uvrA Streptococcus pneumoniae TIGR4

67.306

99.682

0.671

  uvrA Streptococcus pneumoniae D39

67.306

99.682

0.671