Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   IRB79_RS21670 Genome accession   NZ_CP065511
Coordinates   4315565..4316635 (-) Length   356 a.a.
NCBI ID   WP_243504876.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain N497-ZHONG     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4310565..4321635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB79_RS21625 (IRB79_21570) - 4311052..4311846 (+) 795 WP_243504865.1 YqhG family protein -
  IRB79_RS21630 (IRB79_21575) - 4311893..4312078 (-) 186 WP_095245709.1 YqzE family protein -
  IRB79_RS21635 (IRB79_21580) - 4312158..4312655 (-) 498 WP_243504867.1 shikimate kinase -
  IRB79_RS21640 (IRB79_21585) comGG 4312668..4313051 (-) 384 WP_243504869.1 competence type IV pilus minor pilin ComGG -
  IRB79_RS21645 (IRB79_21590) comGF 4313041..4313520 (-) 480 WP_243504871.1 competence type IV pilus minor pilin ComGF -
  IRB79_RS21650 (IRB79_21595) - 4313471..4313800 (-) 330 WP_243504872.1 phosphatase -
  IRB79_RS21655 (IRB79_21600) comGD 4313784..4314224 (-) 441 WP_243504873.1 competence type IV pilus minor pilin ComGD -
  IRB79_RS21660 (IRB79_21605) comGC 4314221..4314547 (-) 327 WP_243504874.1 competence type IV pilus major pilin ComGC -
  IRB79_RS21665 (IRB79_21610) comGB 4314547..4315578 (-) 1032 WP_243504875.1 competence type IV pilus assembly protein ComGB -
  IRB79_RS21670 (IRB79_21615) comGA 4315565..4316635 (-) 1071 WP_243504876.1 competence type IV pilus ATPase ComGA Machinery gene
  IRB79_RS21680 (IRB79_21625) - 4316935..4317288 (-) 354 WP_243504877.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  IRB79_RS21685 (IRB79_21630) - 4317537..4318235 (+) 699 WP_243504878.1 helix-turn-helix domain-containing protein -
  IRB79_RS21690 (IRB79_21635) - 4318400..4318645 (+) 246 WP_009332938.1 DUF2626 domain-containing protein -
  IRB79_RS21695 (IRB79_21640) - 4318691..4319752 (-) 1062 WP_243504880.1 SAM-dependent methyltransferase -
  IRB79_RS21700 (IRB79_21645) - 4319956..4320591 (-) 636 WP_243504882.1 MBL fold metallo-hydrolase -
  IRB79_RS21705 (IRB79_21650) - 4320680..4321159 (+) 480 WP_243504883.1 hypothetical protein -
  IRB79_RS21710 (IRB79_21655) - 4321285..4321458 (+) 174 WP_009332942.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40140.60 Da        Isoelectric Point: 9.2169

>NTDB_id=511499 IRB79_RS21670 WP_243504876.1 4315565..4316635(-) (comGA) [Cytobacillus oceanisediminis strain N497-ZHONG]
MSIIERMAERIIKDAVRSHASDIHIIPRRKDTLIQLRFGSQLTPRLYLPKEECDRLISHFKFTASMDIGEKRRPQSGAYS
LEVDGKMIGMRFSTLPSSHSESLVIRILPQQEQIPFLKISLFPDMTRKMLALLKHAHGLIIFTGPTGSGKTTTLYSLLNE
TSHMFHRNVITLEDPIEKENDLVLQVQVNEKAGVSYSAGLKAILRHDPDIIMVGEIRDAETAKIAVRAALTGHLVLSTMH
TRDAQGAVYRLAEFGVNMMEIEQTLVAVTAQRLVELNCPYCEGECSPFCYGYGRWKRASVFELLAGRALNASIKKARGEI
SLVKYRTLKEVINKGIALGYIKETEYSRWVHDNADK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=511499 IRB79_RS21670 WP_243504876.1 4315565..4316635(-) (comGA) [Cytobacillus oceanisediminis strain N497-ZHONG]
TTGAGTATAATTGAAAGAATGGCAGAACGAATTATCAAAGACGCAGTCAGGAGCCATGCTTCCGACATCCACATTATTCC
CCGAAGAAAAGATACACTAATTCAGCTGAGGTTCGGCAGCCAATTGACCCCCAGGCTTTATCTCCCCAAAGAAGAGTGCG
ACAGACTGATTTCTCATTTTAAATTTACCGCTTCGATGGACATTGGTGAAAAAAGACGGCCGCAAAGCGGTGCCTATTCT
CTTGAAGTAGATGGAAAAATGATTGGAATGCGATTTTCAACCCTCCCATCAAGCCACAGCGAAAGCCTCGTTATCAGAAT
TCTGCCTCAGCAGGAACAAATTCCTTTTTTAAAAATCAGCCTTTTTCCAGACATGACCAGAAAAATGCTTGCATTACTGA
AGCATGCTCATGGATTAATTATTTTCACAGGCCCAACCGGAAGCGGAAAAACCACAACATTGTATTCCCTGCTGAATGAA
ACCTCCCATATGTTCCATCGCAATGTGATTACCCTGGAAGATCCGATTGAAAAAGAGAATGACTTGGTTCTTCAAGTTCA
AGTGAATGAGAAAGCGGGCGTCTCTTATTCCGCAGGCTTGAAAGCAATCCTTCGGCATGACCCCGATATCATTATGGTGG
GTGAAATCAGGGATGCTGAAACTGCGAAGATTGCAGTTAGAGCAGCGCTTACAGGTCACCTTGTCTTAAGCACGATGCAT
ACTCGGGATGCTCAGGGGGCTGTATATCGTTTAGCTGAGTTTGGGGTGAATATGATGGAAATTGAGCAGACCCTAGTGGC
TGTCACGGCTCAGCGCCTTGTCGAATTGAATTGCCCTTATTGTGAAGGGGAATGTTCTCCATTCTGCTATGGATACGGCA
GGTGGAAAAGGGCAAGTGTGTTTGAGCTTCTTGCAGGAAGAGCGCTTAATGCCTCTATAAAGAAGGCAAGAGGCGAAATC
AGCCTTGTTAAGTATCGCACACTTAAAGAGGTAATAAATAAAGGGATTGCTCTTGGATATATAAAGGAAACTGAGTACAG
CAGGTGGGTGCACGATAATGCAGACAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.899

100

0.559
  pilB Glaesserella parasuis strain SC1401

40

98.315

0.393