Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   SIR_RS18140 Genome accession   NC_022246
Coordinates   1741345..1743321 (-) Length   658 a.a.
NCBI ID   WP_021003246.1    Uniprot ID   T1ZHN2
Organism   Streptococcus intermedius B196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1736345..1748321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS18115 (SIR_1646) eeP 1736878..1738149 (-) 1272 WP_021003245.1 RIP metalloprotease RseP Regulator
  SIR_RS18120 (SIR_1647) - 1738301..1739104 (-) 804 WP_020999184.1 phosphatidate cytidylyltransferase -
  SIR_RS18125 (SIR_1648) - 1739113..1739862 (-) 750 WP_003074042.1 isoprenyl transferase -
  SIR_RS18130 (SIR_1649) yajC 1740330..1740668 (-) 339 WP_003074039.1 preprotein translocase subunit YajC -
  SIR_RS18140 (SIR_1650) recP/tkt 1741345..1743321 (-) 1977 WP_021003246.1 transketolase Machinery gene
  SIR_RS18145 (SIR_1651) ulaG 1743462..1744553 (-) 1092 WP_021003247.1 L-ascorbate 6-phosphate lactonase -
  SIR_RS18150 (SIR_1652) - 1744715..1746385 (-) 1671 WP_021003248.1 BglG family transcription antiterminator -
  SIR_RS18155 (SIR_1653) - 1746589..1747296 (-) 708 WP_003074030.1 L-ribulose-5-phosphate 4-epimerase -
  SIR_RS18160 (SIR_1654) - 1747299..1748162 (-) 864 WP_021003249.1 L-ribulose-5-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71325.47 Da        Isoelectric Point: 4.9208

>NTDB_id=51149 SIR_RS18140 WP_021003246.1 1741345..1743321(-) (recP/tkt) [Streptococcus intermedius B196]
MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYDLFTKQMRINPEVPNWINRDRFVLSAGHGSMLLYALLHLSGFQD
VTMEELKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISMATGFAQAERFLAAKYNREGYNLFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLDKLIVLYDSNDINLDGETKDSFTESVRARYNAYGWHTDLVKDGTDLEAINAAIEAAKVSGKPSLIE
VKTVIGYGSPNKQGTNAVHGAPLGAEEVAATRKALTWDYEPFEIPEEVYEDYRVNVAERGKAAYDAWVKLVEAYKQAYPD
LADEVAAVIAGQDPVEIKPEDFPVVETGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDDAHRLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAIRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AIPNLNILRPADARETQAAWYLALKSQTTPTALVLTRQNLTVEAGTDFDKVAKGAYVVYETANGFDTILLASGSEVNLAV
AAAKELEAKGEKIRVVSVPSTDIFDAQDAAYKEEILPNAVRRRVAIEMAASQSWYKYVGLDGAVIGIDKFGASAPAAKVL
KEYGFTVDHIAEVVKNLK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=51149 SIR_RS18140 WP_021003246.1 1741345..1743321(-) (recP/tkt) [Streptococcus intermedius B196]
ATGTCAAATTTATCTGTCAATGCCATTCGTTTTTTAGGAATTGATGCCATTGAAAAATCAAAATCTGGTCACCCAGGTGT
TGTCATGGGCGCGGCTCCGATGGCTTATGACTTGTTTACCAAGCAAATGCGCATCAATCCAGAAGTGCCAAATTGGATTA
ATCGCGATCGGTTTGTTTTATCGGCTGGTCACGGCTCTATGTTACTCTATGCCCTTCTCCATTTGTCTGGTTTTCAAGAT
GTCACAATGGAAGAACTCAAGAACTTCCGTCAATGGGGTTCTAAAACGCCTGGGCATCCCGAATTTGGACATACTGCTGG
TGTAGATGCGACAACTGGGCCACTTGGTCAAGGAATTTCTATGGCAACTGGTTTTGCACAAGCAGAACGTTTCCTAGCGG
CTAAGTATAATCGTGAAGGGTATAACCTCTTTGACCACTATACGTATGTAATCTGTGGTGATGGGGATTTGATGGAAGGT
GTATCTGCTGAAGCAGCTTCTTATGCTGGACTCCAAAAGCTAGACAAGCTCATCGTTCTCTATGACTCCAACGATATTAA
TCTGGATGGAGAAACCAAGGATTCCTTTACAGAAAGTGTTCGGGCGCGTTATAATGCTTATGGTTGGCACACAGATTTGG
TCAAAGATGGCACAGACTTAGAAGCGATCAATGCAGCGATTGAAGCTGCAAAAGTTTCTGGCAAACCGTCCTTAATTGAA
GTGAAAACAGTGATTGGTTATGGTTCACCAAACAAACAAGGGACTAATGCCGTTCATGGAGCTCCTCTTGGTGCAGAAGA
AGTAGCCGCTACTCGTAAAGCTCTTACTTGGGATTACGAACCGTTTGAAATTCCTGAAGAAGTCTACGAAGATTATCGGG
TCAATGTTGCTGAACGTGGGAAAGCTGCTTATGATGCTTGGGTAAAACTTGTTGAAGCATACAAACAAGCCTATCCTGAC
TTAGCTGATGAAGTAGCTGCTGTTATTGCGGGACAAGATCCAGTTGAGATCAAGCCAGAAGATTTCCCAGTAGTAGAAAC
AGGTTTCTCACAAGCTACTCGTAATTCTAGCCAAGATGCTTTAAATGCGGCAGCAAAAGTACTTCCAACATTCCTTGGTG
GCTCTGCTGACCTAGCTCATTCTAATATGACCTATATCAAAGAAGATGGCTTGCAAGATGATGCCCACCGCCTTAACCGC
AACATTCAATTCGGTGTACGTGAATTTGCTATGGGAACGATTCTGAATGGTATGGCACTTCACGGGGGACTTCGTGTTTA
TGGTGGTACATTCTTTGTGTTCTCAGATTATGTCAAAGCGGCTATTCGTTTATCAGCTCTTCAAGGCTTGCCTGTAACCT
ATGTCTTTACACATGATTCAATTGCAGTTGGTGAGGATGGTCCAACTCATGAACCAATTGAGCACTTAGCAGGTCTTCGT
GCAATTCCAAACCTCAATATCTTGCGCCCAGCAGATGCACGTGAAACACAGGCTGCTTGGTACTTGGCGCTGAAGAGTCA
AACAACTCCAACAGCTTTGGTTCTCACACGTCAAAACTTGACAGTTGAAGCTGGAACTGACTTTGACAAGGTGGCTAAAG
GAGCTTATGTGGTATATGAAACAGCAAATGGTTTTGATACAATTCTTCTGGCATCTGGTTCTGAAGTTAATTTAGCTGTA
GCGGCTGCAAAAGAGTTGGAGGCTAAAGGAGAAAAGATTCGTGTTGTCAGCGTACCATCAACAGATATCTTTGATGCACA
AGATGCTGCCTACAAAGAAGAAATTCTACCAAATGCAGTCCGCCGCCGTGTCGCCATTGAAATGGCTGCAAGTCAGTCTT
GGTACAAATATGTTGGACTTGATGGAGCTGTGATTGGTATTGACAAATTTGGCGCTTCTGCCCCAGCTGCTAAAGTGCTT
AAAGAATATGGTTTCACCGTTGATCATATCGCAGAAGTTGTGAAAAACTTGAAATAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, C-terminal domain (Transketolase_C)

(543-650)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

78.843

99.848

0.787

Multiple sequence alignment