Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IRB79_RS02290 Genome accession   NZ_CP065511
Coordinates   434767..435720 (+) Length   317 a.a.
NCBI ID   WP_221881271.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain N497-ZHONG     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429767..440720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB79_RS02275 (IRB79_02280) glmM 430067..431416 (+) 1350 WP_243506513.1 phosphoglucosamine mutase -
  IRB79_RS27995 - 431714..431839 (+) 126 WP_275724031.1 hypothetical protein -
  IRB79_RS02280 (IRB79_02285) glmS 431936..433738 (+) 1803 WP_243506514.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  IRB79_RS02285 (IRB79_02290) - 434041..434430 (+) 390 WP_243506515.1 ribbon-helix-helix protein, CopG family -
  IRB79_RS02290 (IRB79_02295) ceuB 434767..435720 (+) 954 WP_221881271.1 ABC transporter permease Machinery gene
  IRB79_RS02295 (IRB79_02300) - 435710..436663 (+) 954 WP_243506516.1 iron chelate uptake ABC transporter family permease subunit -
  IRB79_RS02300 (IRB79_02305) - 436660..437427 (+) 768 WP_243506517.1 ABC transporter ATP-binding protein -
  IRB79_RS02305 (IRB79_02310) - 437637..438662 (+) 1026 WP_243506519.1 siderophore ABC transporter substrate-binding protein -
  IRB79_RS02310 (IRB79_02315) - 438943..439581 (+) 639 WP_243506520.1 O-methyltransferase -
  IRB79_RS02315 (IRB79_02320) - 439645..440481 (-) 837 WP_243506521.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34723.77 Da        Isoelectric Point: 9.3878

>NTDB_id=511469 IRB79_RS02290 WP_221881271.1 434767..435720(+) (ceuB) [Cytobacillus oceanisediminis strain N497-ZHONG]
MRLWMLGIAAIVLSFISLFIGAIDITPKDLLNWESDETHIFLISRIPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALAGTFLFMQILDRIKFKDVIFVPLVGIMYGNILSSITTFFGYEADLL
QNISSWLMGSFTLIIAGRYELLYVSIPAIILAYLYANKFTVAGMGEDFARNLGLSYKLVLNIGLILVAVISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=511469 IRB79_RS02290 WP_221881271.1 434767..435720(+) (ceuB) [Cytobacillus oceanisediminis strain N497-ZHONG]
ATGAGATTATGGATGTTAGGAATTGCAGCCATCGTTCTGTCTTTTATCTCGCTATTTATCGGAGCAATAGATATAACGCC
TAAGGATCTGCTTAATTGGGAATCAGATGAAACACATATTTTCCTTATTAGCCGCATCCCACGGTTATTGGCGATTATAT
TAGCGGGGGCAGGGATGAGTATTGCCGGTTTAATTATGCAGTCTTTAAGCCGAAATAAGTTTGTATCACCAACTACTGCT
GGAACATTGGATGCAGCAAAGCTGGGTATTTTAATTTCCATGCTGTTTTTTACGAATGTAACCTATACACAGCAAGTTAT
TTTTAGTTTTGCCTTTGCTTTAGCAGGCACATTTCTCTTTATGCAGATTTTAGATCGTATAAAATTTAAAGATGTTATTT
TTGTTCCATTAGTTGGAATTATGTATGGGAATATTTTATCTTCCATTACAACGTTCTTTGGATATGAAGCAGATCTTCTG
CAAAATATATCTTCTTGGCTTATGGGAAGTTTCACTTTGATTATTGCTGGCCGTTATGAGCTTTTATATGTTAGTATTCC
AGCTATTATTTTAGCGTATCTTTATGCGAATAAATTTACAGTTGCAGGAATGGGTGAAGATTTTGCGAGAAATCTAGGTT
TAAGTTATAAGCTGGTACTAAATATAGGTCTGATACTTGTTGCGGTTATATCGACAACGGTTGTCCTAACTGTCGGGGTT
ATTCCATTTTTAGGACTGATTGTGCCGAATATTGTCTCTCTTTATTTAGGTGATAACCTGCGCAAAACGATTCCGCATAC
AGCGGTGTTAGGAATTGTTTTCCTATTAATATGCGACATTCTAGGGCGAATCATCATTCATCCTTATGAAATTCCAGTTA
ATGTAACAGTGGCAGTGATAGGCAGTGCAATCTTCTTAACGATGCTGCTTAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.814

94.953

0.53