Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SPAF_RS07815 Genome accession   NC_017905
Coordinates   1580924..1581634 (+) Length   236 a.a.
NCBI ID   WP_014713717.1    Uniprot ID   I1ZNA5
Organism   Streptococcus parasanguinis FW213     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575924..1586634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS07805 (Spaf_1558) treC 1577090..1578712 (-) 1623 WP_041826415.1 alpha,alpha-phosphotrehalase -
  SPAF_RS07810 (Spaf_1559) treP 1578767..1580743 (-) 1977 WP_041826416.1 PTS system trehalose-specific EIIBC component -
  SPAF_RS07815 (Spaf_1560) treR 1580924..1581634 (+) 711 WP_014713717.1 trehalose operon repressor Regulator
  SPAF_RS07820 (Spaf_1561) - 1582273..1583076 (-) 804 WP_014713718.1 ATP-binding cassette domain-containing protein -
  SPAF_RS07825 (Spaf_1562) - 1583086..1583979 (-) 894 WP_014713719.1 ABC transporter permease -
  SPAF_RS07830 (Spaf_1564) - 1583990..1584967 (-) 978 WP_014713720.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27609.69 Da        Isoelectric Point: 9.0631

>NTDB_id=51145 SPAF_RS07815 WP_014713717.1 1580924..1581634(+) (treR) [Streptococcus parasanguinis FW213]
MKKYQQIYQILKEQILEEKYVVGDFLPSENDLKKQYQVSRDTIRKSLKLLQEEGFIETVQGMGSQICRQAHFDFPVSQLT
SYQEIVKASGLRSETNVIRLEKISIDEKGAKKTGFPLHRLVWKVTRQRVVDGVASVLDIDYLDRELIPGLTKEISQHSIY
QYIEEDLKLQIGYAKKEILISPIDNRDKILLDLGKDQHVVTVRSQVHLADGRQFQFTESRHKLDKFHFVDYAERRK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=51145 SPAF_RS07815 WP_014713717.1 1580924..1581634(+) (treR) [Streptococcus parasanguinis FW213]
ATGAAAAAATACCAACAAATCTATCAAATTTTAAAAGAACAAATACTAGAAGAAAAATATGTAGTCGGGGATTTTCTGCC
CAGCGAGAACGACTTAAAAAAGCAATACCAGGTCAGTCGAGATACCATCCGTAAATCCCTCAAGCTCTTGCAGGAGGAAG
GCTTTATCGAGACTGTTCAAGGGATGGGATCGCAAATTTGTAGGCAAGCTCACTTTGATTTCCCCGTTTCCCAATTAACC
AGCTACCAAGAAATCGTCAAAGCTTCTGGTCTTCGCTCAGAAACTAATGTCATTCGTTTGGAAAAGATCAGTATTGATGA
AAAAGGAGCTAAAAAGACTGGCTTCCCCCTTCACCGTTTGGTTTGGAAAGTAACCCGACAACGAGTGGTGGATGGCGTCG
CTTCTGTCTTAGATATTGATTACCTAGACAGAGAGCTGATCCCTGGCCTAACCAAGGAAATTTCCCAGCACTCTATCTAC
CAATATATAGAAGAAGACTTGAAATTGCAGATTGGCTATGCAAAGAAAGAAATTTTGATTTCACCAATCGATAATCGCGA
CAAAATCTTACTGGATCTTGGAAAAGACCAACACGTGGTAACGGTCCGTTCCCAAGTTCACCTAGCAGACGGACGCCAAT
TCCAGTTCACCGAAAGCCGACACAAATTAGACAAGTTTCATTTTGTCGACTATGCAGAGCGGAGGAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I1ZNA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

56.78

100

0.568

Multiple sequence alignment