Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   IQ781_RS17115 Genome accession   NZ_CP065509
Coordinates   3399253..3400602 (+) Length   449 a.a.
NCBI ID   WP_050228965.1    Uniprot ID   -
Organism   Bacillus sp. N447-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3394253..3405602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ781_RS17095 (IQ781_17055) - 3395331..3395966 (-) 636 WP_000926669.1 YigZ family protein -
  IQ781_RS17100 (IQ781_17060) - 3396203..3397045 (+) 843 WP_000684725.1 DegV family protein -
  IQ781_RS17105 (IQ781_17065) - 3397218..3397532 (+) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  IQ781_RS17110 (IQ781_17070) - 3397681..3399126 (+) 1446 WP_000499476.1 C40 family peptidase -
  IQ781_RS17115 (IQ781_17075) comFA 3399253..3400602 (+) 1350 WP_050228965.1 ATP-dependent helicase ComFA Machinery gene
  IQ781_RS17120 (IQ781_17080) - 3400602..3401306 (+) 705 WP_013142274.1 ComF family protein -
  IQ781_RS17125 (IQ781_17085) cspC 3401433..3401630 (+) 198 WP_001990088.1 cold shock protein CspC -
  IQ781_RS17130 (IQ781_17090) raiA 3401953..3402495 (+) 543 WP_000671185.1 ribosome-associated translation inhibitor RaiA -
  IQ781_RS17135 (IQ781_17095) - 3402767..3403249 (+) 483 WP_000023374.1 hypothetical protein -
  IQ781_RS17140 (IQ781_17100) - 3403367..3403935 (+) 569 Protein_3324 hypothetical protein -
  IQ781_RS17145 (IQ781_17105) - 3403963..3404748 (+) 786 Protein_3325 hypothetical protein -
  IQ781_RS17150 (IQ781_17110) - 3404735..3405422 (+) 688 Protein_3326 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51072.93 Da        Isoelectric Point: 9.9459

>NTDB_id=511441 IQ781_RS17115 WP_050228965.1 3399253..3400602(+) (comFA) [Bacillus sp. N447-1]
MVAGKQLLLEELSSDLQRKLNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRLLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKNSNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVIVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLNRERIPRVLLQWLKMYLNKKYPVFL
FVPHVRYIEEISSLLKSLHNKVEGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=511441 IQ781_RS17115 WP_050228965.1 3399253..3400602(+) (comFA) [Bacillus sp. N447-1]
ATGGTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGAAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGTGGAAATGTAGATCGGCTGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGAACGGATGTTGTTTTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTAGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACCACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATAGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCGTTGCCAGTTCCTCTATTTTGCTGGTGCGGAAATTGGAAGAAAA
GCCTCAACCGTGAAAGAATTCCTCGAGTTTTACTACAATGGTTAAAGATGTACTTAAACAAAAAGTATCCTGTTTTTTTA
TTCGTTCCCCATGTACGATATATAGAAGAAATAAGCTCGTTATTGAAATCATTGCATAATAAAGTTGAAGGGGTACATGC
AGAAGATCCGATGAGAAAAGAGAAAGTCGCAGCGTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCATATGGAGAGGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(313-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.392

93.096

0.488