Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IQ781_RS15410 Genome accession   NZ_CP065509
Coordinates   3044304..3044588 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. N447-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3039304..3049588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ781_RS15395 (IQ781_15350) rnmV 3040130..3040687 (-) 558 WP_000692843.1 ribonuclease M5 -
  IQ781_RS15400 (IQ781_15355) - 3040902..3041669 (-) 768 WP_000895851.1 TatD family hydrolase -
  IQ781_RS15405 (IQ781_15360) metG 3041836..3043818 (-) 1983 WP_000134133.1 methionine--tRNA ligase -
  IQ781_RS15410 (IQ781_15365) abrB 3044304..3044588 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IQ781_RS15415 (IQ781_15370) rsmI 3044609..3045484 (-) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IQ781_RS15420 (IQ781_15375) - 3045453..3045743 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  IQ781_RS15425 (IQ781_15380) - 3045730..3046470 (-) 741 WP_139847277.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IQ781_RS15430 (IQ781_15385) yabA 3046553..3046903 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  IQ781_RS15435 (IQ781_15390) - 3046918..3047745 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  IQ781_RS15440 (IQ781_15395) holB 3047751..3048734 (-) 984 WP_000169561.1 DNA polymerase III subunit delta' -
  IQ781_RS15445 (IQ781_15400) tmk 3048770..3049396 (-) 627 WP_060634671.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=511433 IQ781_RS15410 WP_000843036.1 3044304..3044588(+) (abrB) [Bacillus sp. N447-1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=511433 IQ781_RS15410 WP_000843036.1 3044304..3044588(+) (abrB) [Bacillus sp. N447-1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATTTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851