Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IQ781_RS03455 Genome accession   NZ_CP065509
Coordinates   708804..709082 (-) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus sp. N447-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 703804..714082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ781_RS03430 (IQ781_03405) - 704029..704619 (-) 591 WP_000265880.1 SGNH/GDSL hydrolase family protein -
  IQ781_RS03435 (IQ781_03410) - 704815..705068 (-) 254 Protein_690 acyltransferase -
  IQ781_RS03440 (IQ781_03415) - 705269..705928 (-) 660 WP_139846813.1 CatB-related O-acetyltransferase -
  IQ781_RS03445 (IQ781_03420) - 706182..706940 (-) 759 WP_000347994.1 TSUP family transporter -
  IQ781_RS03450 (IQ781_03425) - 707008..708258 (-) 1251 WP_242808222.1 hypothetical protein -
  IQ781_RS03455 (IQ781_03430) abrB 708804..709082 (-) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IQ781_RS03460 - 709221..710093 (-) 873 Protein_695 helix-turn-helix domain-containing protein -
  IQ781_RS03465 (IQ781_03445) - 710468..710729 (+) 262 Protein_696 helix-turn-helix transcriptional regulator -
  IQ781_RS03470 (IQ781_03450) - 710958..711560 (-) 603 WP_139846814.1 hypothetical protein -
  IQ781_RS03475 (IQ781_03455) - 711586..712395 (-) 810 WP_139846815.1 papain-like cysteine protease family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=511411 IQ781_RS03455 WP_000842216.1 708804..709082(-) (abrB) [Bacillus sp. N447-1]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=511411 IQ781_RS03455 WP_000842216.1 708804..709082(-) (abrB) [Bacillus sp. N447-1]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489