Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STCNRZ1202_RS02290 Genome accession   NZ_CP065506
Coordinates   422198..422641 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1202     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 417198..427641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1202_RS02270 (STCNRZ1202_02290) - 417763..418515 (-) 753 WP_087009712.1 NUDIX hydrolase -
  STCNRZ1202_RS02275 (STCNRZ1202_02295) - 418579..419685 (-) 1107 WP_180473414.1 AAA family ATPase -
  STCNRZ1202_RS02280 (STCNRZ1202_02300) gdhA 420029..421381 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STCNRZ1202_RS02285 (STCNRZ1202_02305) - 421638..422048 (+) 411 WP_087009714.1 peptide deformylase -
  STCNRZ1202_RS02290 (STCNRZ1202_02310) rcrR 422198..422641 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  STCNRZ1202_RS02295 (STCNRZ1202_02315) rcrP 422645..424459 (+) 1815 WP_087009715.1 ABC transporter ATP-binding protein Regulator
  STCNRZ1202_RS02300 (STCNRZ1202_02320) rcrQ 424449..426227 (+) 1779 WP_180481209.1 ABC transporter ATP-binding protein Regulator
  STCNRZ1202_RS02305 (STCNRZ1202_02325) - 426382..426753 (+) 372 WP_002945426.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=511366 STCNRZ1202_RS02290 WP_002945408.1 422198..422641(+) (rcrR) [Streptococcus thermophilus strain CNRZ1202]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=511366 STCNRZ1202_RS02290 WP_002945408.1 422198..422641(+) (rcrR) [Streptococcus thermophilus strain CNRZ1202]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAATAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537