Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   STT55_RS07990 Genome accession   NZ_CP065502
Coordinates   1530992..1532068 (-) Length   358 a.a.
NCBI ID   WP_022096499.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST55     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1525992..1537068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT55_RS07970 (STT55_07900) - 1527104..1529170 (-) 2067 WP_173940635.1 sodium:proton antiporter -
  STT55_RS07975 (STT55_07905) - 1529179..1529421 (-) 243 WP_011226461.1 hypothetical protein -
  STT55_RS07980 (STT55_07910) - 1529418..1529966 (-) 549 WP_011226462.1 class I SAM-dependent methyltransferase -
  STT55_RS07985 (STT55_07915) - 1529963..1530907 (-) 945 WP_022096500.1 TIGR01212 family radical SAM protein -
  STT55_RS07990 (STT55_07920) sepM 1530992..1532068 (-) 1077 WP_022096499.1 SepM family pheromone-processing serine protease Regulator
  STT55_RS07995 (STT55_07925) coaD 1532046..1532543 (-) 498 WP_022096498.1 pantetheine-phosphate adenylyltransferase -
  STT55_RS08000 (STT55_07930) rsmD 1532577..1533176 (-) 600 Protein_1523 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  STT55_RS08005 (STT55_07935) trxB 1533267..1534220 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  STT55_RS08010 (STT55_07940) - 1534253..1534477 (-) 225 WP_087010135.1 DUF4059 family protein -
  STT55_RS08015 (STT55_07945) - 1534692..1535435 (-) 744 WP_011226469.1 amino acid ABC transporter ATP-binding protein -
  STT55_RS08020 (STT55_07950) - 1535435..1536181 (-) 747 WP_095559509.1 amino acid ABC transporter permease -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 39202.09 Da        Isoelectric Point: 9.4944

>NTDB_id=511276 STT55_RS07990 WP_022096499.1 1530992..1532068(-) (sepM) [Streptococcus thermophilus strain ST55]
MANKTKSKSLLEKMWRIKWWLLSIFTVLFLLFALFFPLNNYYVELPGGAFDTKEVLTVNKKADDSKGSYNFVAVAQTKAT
LALMLYAQFNDFAKLQTAEEATGNYSDEDFMRINQFYMETSQNQAVYQGLTLAGKEVSLEYMGVYVLQVADDSSFKGVLN
IADTVTAVNGKTFDNSTDMIKYVQGLKLGSKVKVTYMRDGKEKTATGKIIKIANGKNGIGIGLTDHTEIKSPENVKFKLD
GVGGPSAGLMFTLAIYDQVSGQDLKAGRKIAGTGTIEKDGAVGDIGGAYLKVKSAADSGADIFFVPNNLVTKEMKKADPD
AKTNYQEAKEAAEKLGTKMKIVPVKTAQEAIDYLKKTK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=511276 STT55_RS07990 WP_022096499.1 1530992..1532068(-) (sepM) [Streptococcus thermophilus strain ST55]
GTGGCAAACAAGACAAAATCTAAATCGCTATTAGAGAAAATGTGGCGTATTAAGTGGTGGTTATTAAGTATTTTTACGGT
ACTTTTCCTCCTTTTTGCCCTCTTTTTCCCGCTCAATAATTACTATGTGGAGCTTCCGGGTGGTGCTTTTGATACCAAGG
AAGTCTTGACAGTGAATAAGAAAGCTGATGATTCTAAGGGCTCCTATAATTTTGTGGCGGTGGCTCAAACCAAGGCGACT
TTGGCCTTGATGCTCTATGCTCAGTTTAATGATTTTGCAAAGCTTCAAACGGCTGAAGAGGCAACTGGAAATTACTCTGA
TGAAGATTTCATGCGCATCAACCAATTTTACATGGAGACTTCTCAAAACCAAGCGGTTTATCAGGGCTTGACTCTGGCTG
GTAAGGAGGTTAGTTTGGAGTATATGGGTGTCTATGTGCTTCAGGTTGCTGATGATTCTAGCTTCAAGGGTGTCCTCAAT
ATTGCTGATACGGTGACGGCTGTTAATGGTAAGACCTTTGATAATTCTACTGACATGATTAAATACGTTCAAGGACTTAA
GCTGGGTTCAAAGGTCAAGGTCACTTATATGAGAGATGGCAAAGAAAAGACTGCTACTGGTAAGATTATTAAGATTGCCA
ATGGCAAAAATGGTATTGGTATCGGCCTAACGGACCATACTGAGATCAAGAGTCCTGAGAATGTTAAGTTTAAACTGGAT
GGTGTCGGTGGGCCAAGTGCTGGTCTTATGTTTACCTTGGCTATTTACGATCAGGTGTCTGGTCAAGACCTCAAGGCTGG
CCGCAAGATTGCTGGTACAGGAACTATTGAAAAAGATGGGGCTGTCGGTGATATCGGTGGGGCCTATCTCAAGGTGAAAT
CTGCGGCTGATAGTGGCGCAGACATTTTCTTCGTGCCAAATAATCTAGTAACTAAGGAAATGAAAAAGGCTGATCCGGAT
GCCAAGACTAATTATCAAGAGGCCAAGGAAGCTGCCGAGAAACTGGGGACCAAGATGAAAATCGTCCCTGTTAAAACAGC
TCAAGAAGCCATTGATTATTTGAAAAAGACTAAATGA

Domains


Predicted by InterproScan.

(137-206)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

63.05

95.251

0.601