Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STT55_RS02225 Genome accession   NZ_CP065502
Coordinates   402490..402933 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST55     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 397490..407933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT55_RS02205 (STT55_02195) - 398012..398766 (-) 755 Protein_373 NUDIX hydrolase -
  STT55_RS02210 (STT55_02200) - 398830..399936 (-) 1107 Protein_374 AAA family ATPase -
  STT55_RS02215 (STT55_02205) gdhA 400280..401632 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STT55_RS02220 (STT55_02210) - 401890..402300 (+) 411 WP_011680804.1 peptide deformylase -
  STT55_RS02225 (STT55_02215) rcrR 402490..402933 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  STT55_RS02230 (STT55_02220) rcrP 402937..404751 (+) 1815 WP_022096861.1 ABC transporter ATP-binding protein Regulator
  STT55_RS02235 (STT55_02225) rcrQ 404741..406519 (+) 1779 WP_022096860.1 ABC transporter ATP-binding protein Regulator
  STT55_RS02240 (STT55_02230) - 406675..407046 (+) 372 WP_002945426.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=511244 STT55_RS02225 WP_002945408.1 402490..402933(+) (rcrR) [Streptococcus thermophilus strain ST55]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=511244 STT55_RS02225 WP_002945408.1 402490..402933(+) (rcrR) [Streptococcus thermophilus strain ST55]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537