Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   STAVA116_RS09010 Genome accession   NZ_CP065498
Coordinates   1736460..1737227 (+) Length   255 a.a.
NCBI ID   WP_087010238.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA116     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1731460..1742227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS08995 (STAVA116_08970) - 1733776..1734459 (-) 684 WP_011226711.1 YoaK family protein -
  STAVA116_RS09000 (STAVA116_08975) rlmH 1734475..1734954 (-) 480 WP_084829945.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  STAVA116_RS09005 (STAVA116_08980) htrA 1735159..1736394 (+) 1236 WP_347229872.1 trypsin-like peptidase domain-containing protein Regulator
  STAVA116_RS09010 (STAVA116_08985) spo0J 1736460..1737227 (+) 768 WP_087010238.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29513.96 Da        Isoelectric Point: 9.6763

>NTDB_id=511167 STAVA116_RS09010 WP_087010238.1 1736460..1737227(+) (spo0J) [Streptococcus thermophilus strain AVA116]
MSEQLKTLSISEIYPNPFQPRLKFSDEELVELSQSISENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRNLIDELTYSHEELAKAMGKSRPYISNALRLLQLPREIQTSIENGSLSQG
HARALLAIEDSRKQLTIFQQVVAERWSVRTLEKKLQELPRKQKSKKDIHVKDKEKELERLLGLPITLRYHKNHSGTIQIH
FSTEEDFNRIINRLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=511167 STAVA116_RS09010 WP_087010238.1 1736460..1737227(+) (spo0J) [Streptococcus thermophilus strain AVA116]
ATGTCAGAACAACTCAAAACTTTATCTATTAGTGAAATTTACCCCAATCCTTTTCAACCTCGTCTAAAATTCTCCGATGA
AGAGTTAGTAGAACTAAGTCAATCAATATCAGAAAATGGTTTAATACAGCCAATTATTGTACGAAAATCTGACATTATTG
GTTATGAACTAATTGCTGGAGAAAGACGTTTACGAGCCTGTAAACGTTTAGGGATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATCTACAACGATCAAATCTCAATCCTATTGAAGAAGC
AAAGGCCTATCGTAATTTAATTGATGAGTTAACTTATAGTCACGAGGAGCTCGCTAAAGCTATGGGAAAATCTAGACCAT
ATATTAGTAACGCTCTTAGACTACTACAACTTCCGCGAGAGATACAAACGAGTATTGAAAACGGAAGTCTGAGTCAGGGA
CATGCTAGAGCACTCTTAGCTATTGAGGATTCTCGAAAGCAGTTAACCATCTTTCAGCAGGTTGTGGCTGAAAGATGGTC
TGTTCGTACTCTAGAAAAAAAACTTCAGGAACTTCCTAGAAAACAAAAATCTAAAAAAGATATCCATGTAAAAGATAAAG
AAAAAGAACTTGAAAGATTACTAGGTCTCCCTATAACTCTACGTTATCACAAAAATCACTCAGGAACGATTCAAATACAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAGGCTTATCTAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(8-95)

HTH domain found in ParB protein (HTH_ParB)

(147-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.471

100

0.565