Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KU538_RS00995 Genome accession   NZ_CP077922
Coordinates   202433..203515 (+) Length   360 a.a.
NCBI ID   WP_225805676.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 202     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 197433..208515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU538_RS00975 (KU538_00965) gdpS 197811..198881 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  KU538_RS00980 (KU538_00970) - 199199..200254 (+) 1056 WP_000258150.1 glycosyltransferase family 4 protein -
  KU538_RS00985 (KU538_00975) - 200418..201059 (-) 642 WP_000192949.1 YigZ family protein -
  KU538_RS00990 (KU538_00980) fakB1 201203..202069 (+) 867 WP_225805675.1 fatty acid kinase binding subunit FakB1 -
  KU538_RS00995 (KU538_00985) comFA 202433..203515 (+) 1083 WP_225805676.1 DEAD/DEAH box helicase Machinery gene
  KU538_RS01000 (KU538_00990) - 203508..204182 (+) 675 WP_001057962.1 ComF family protein -
  KU538_RS01005 (KU538_00995) hpf 204243..204815 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KU538_RS01010 (KU538_01000) secA 205229..207760 (+) 2532 WP_000506529.1 preprotein translocase subunit SecA -
  KU538_RS01015 (KU538_01005) - 207802..207921 (+) 120 WP_031774844.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41985.48 Da        Isoelectric Point: 9.4922

>NTDB_id=511167 KU538_RS00995 WP_225805676.1 202433..203515(+) (comFA) [Staphylococcus aureus strain 202]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PCVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
IEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSIYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=511167 KU538_RS00995 WP_225805676.1 202433..203515(+) (comFA) [Staphylococcus aureus strain 202]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGAGCAGGTAAGACAGAAATGATGTTCCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCATGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
ATTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGATTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367