Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   STAVA116_RS08080 Genome accession   NZ_CP065498
Coordinates   1572177..1573538 (-) Length   453 a.a.
NCBI ID   WP_087010186.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1567177..1578538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS08050 (STAVA116_08000) - 1567778..1568794 (-) 1017 Protein_1540 peptide ABC transporter ATP-binding protein -
  STAVA116_RS08055 (STAVA116_08005) rplA 1568922..1569611 (-) 690 WP_002946412.1 50S ribosomal protein L1 -
  STAVA116_RS08060 (STAVA116_08010) rplK 1569711..1570136 (-) 426 WP_002953535.1 50S ribosomal protein L11 -
  STAVA116_RS08065 (STAVA116_08015) - 1570308..1570661 (+) 354 WP_002953536.1 DUF3397 domain-containing protein -
  STAVA116_RS08070 (STAVA116_08020) - 1570753..1571250 (-) 498 WP_024704233.1 carbonic anhydrase -
  STAVA116_RS08075 (STAVA116_08025) - 1571392..1572088 (-) 697 Protein_1545 TIGR00266 family protein -
  STAVA116_RS08080 (STAVA116_08030) radA 1572177..1573538 (-) 1362 WP_087010186.1 DNA repair protein RadA Machinery gene
  STAVA116_RS08085 (STAVA116_08035) - 1573716..1574162 (-) 447 WP_002947069.1 dUTP diphosphatase -
  STAVA116_RS08090 (STAVA116_08040) - 1574376..1574980 (+) 605 Protein_1548 NADPH-dependent FMN reductase -
  STAVA116_RS08095 - 1574999..1576250 (+) 1252 Protein_1549 NAD(P)H-dependent oxidoreductase -
  STAVA116_RS08100 (STAVA116_08055) - 1576368..1577160 (+) 793 Protein_1550 formate/nitrite transporter family protein -
  STAVA116_RS08105 (STAVA116_08060) - 1577169..1577741 (+) 573 Protein_1551 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49404.78 Da        Isoelectric Point: 6.6525

>NTDB_id=511157 STAVA116_RS08080 WP_087010186.1 1572177..1573538(-) (radA) [Streptococcus thermophilus strain AVA116]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQDVKNARVSLTGEKSKPTKLKEVSSISYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
GIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELIQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYVPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=511157 STAVA116_RS08080 WP_087010186.1 1572177..1573538(-) (radA) [Streptococcus thermophilus strain AVA116]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAGGTTGAGGTGCAGGATGTTAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAGTTATGCCCGCATAAAAACCGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCGACCCTCCTCTTACA
GGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCGGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCAGTCCGTAGTCAAGTGGAG
GGTATCAAACCCGATTTCCTCATTATTGATTCTATTCAGACCATCATGAGCCCAGAGATCTCTGGCGTTCAAGGTTCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATACAGATTGCCAAAACCAATAACATTGCCACTTTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACTGTGCTTTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTCTGAGGGCAGTTAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAACGCAAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCCGTTGCTA
TCGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTCGTAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAGCAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAGATTTATGTTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTCATTGGGGTCACAACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611